CCBR ATACseq pipeline overview

Tools from numerous open source ATACseq data analysis are composed together to create a comprehensive CCBR ATACseq pipeline. Here are some of the flowchart representations of the pipeline.

Overview

TAD or Trimming-Alignment-Deduplication

BAM-to-FLD (fragment length distribution)

TSS (transcript-start-site) enrichment

FRiP (fraction of reads in peaks)

Motif enrichment

Jaccard and ChIPSeeker