requirements_full.txt

absl-py==0.9.0
addict==2.2.1
aiohttp==3.7.2
alabaster==0.7.12
albumentations==0.4.5
allennlp==1.2.2
allennlp-models==1.2.2
anaconda-client==1.7.2
anaconda-navigator==1.9.7
anaconda-project==0.8.3
antlr4-python3-runtime==4.8
anykeystore==0.2
apex==0.1
apipkg==1.5
appdirs==1.4.4
argcomplete==1.12.0
asn1crypto==1.3.0
astor==0.8.1
astroid==2.3.1
astropy==3.2.2
astunparse==1.6.3
async-timeout==3.0.1
atomicwrites==1.3.0
attrs==19.3.0
audioread==2.1.8
autopep8==1.5.4
awscli==1.18.16
Babel==2.8.0
backcall==0.1.0
backports.csv==1.0.7
backports.functools-lru-cache==1.6.1
backports.os==0.1.1
backports.shutil-get-terminal-size==1.0.0
backports.tempfile==1.0
backports.weakref==1.0.post1
beautifulsoup4==4.8.2
benepar==0.2.0
-e git+https://github.com/Tiiiger/bert_score.git@0e56727555af9160ccf81364ce538873580220fb#egg=bert_score
bert-tensorflow==1.0.3
bitarray==1.2.1
bkcharts==0.2
black==20.8b1
bleach==3.1.0
blinker==1.4
blis==0.4.1
bokeh==1.3.4
boto==2.49.0
boto3==1.16.30
botocore==1.19.30
bottle==0.12.18
Bottleneck==1.2.1
brotlipy==0.7.0
build==0.3.1.post1
cachetools==4.0.0
catalogue==2.0.6
Cerberus==1.3.2
certifi==2020.12.5
cffi==1.14.0
chardet==3.0.4
cheroot==8.3.0
CherryPy==18.5.0
click==7.1.2
cloudpickle==1.3.0
clyent==1.2.2
colorama==0.4.3
colorlog==4.1.0
conda-package-handling==1.6.0
conda-verify==3.4.2
ConfigArgParse==1.0
configparser==5.0.0
conllu==4.2.1
contextlib2==0.6.0.post1
crepe==0.0.11
cryptacular==1.5.5
cryptography==2.7
cycler==0.10.0
cymem==2.0.3
Cython==0.29.15
cytoolz==0.11.0
dacite==1.6.0
dask==2.5.2
dataclasses==0.6
datasets==1.12.1
decorator==4.4.1
defusedxml==0.6.0
detectron2==0.1.1+cu100
diffimg==0.2.3
dill==0.3.1.1
Distance==0.1.3
distributed==2.5.2
docformatter==1.3.1
docker==4.2.2
docker-pycreds==0.4.0
docutils==0.16
dynetx==0.2.2
easydict==1.9
emoji==0.5.4
en-core-sci-md==0.2.0
en-core-web-md==3.2.0
en-core-web-sm==2.2.5
en-ner-bc5cdr-md==0.2.0
en-ner-bionlp13cg-md==0.2.0
entrypoints==0.3
et-xmlfile==1.0.1
execnet==1.7.1
ezppl==0.0.0
facenet-pytorch==2.5.0
# Editable install with no version control (fairseq==1.0.0a0)
-e /juice/scr/tianyizhang/projects/fairseq
fastai==2.0.15
fastBPE==0.1.0
fastcache==1.1.0
fastcore==1.0.20
fastprogress==1.0.0
fastscore==1.10.3
feedparser==5.2.1
filelock==3.0.12
flake8==3.8.3
flake8-bugbear==20.1.4
Flask==1.1.1
fsspec==2021.9.0
ftfy==5.7
funcy==1.15
fusepy==2.0.4
future==0.18.2
fvcore==0.1.dev200420
gast==0.3.3
gdown==3.12.2
gensim==3.8.3
gevent==1.4.0
gin-config==0.3.0
gitdb==4.0.4
gitdb2==4.0.2
GitPython==3.1.1
glob2==0.7
gmpy2==2.0.8
google-auth==1.10.1
google-auth-oauthlib==0.4.1
google-pasta==0.1.8
googleapis-common-protos==1.51.0
gql==0.2.0
graphql-core==1.1
greenlet==0.4.15
grpcio==1.26.0
guppy3==3.1.0
gym==0.17.1
h5py==2.10.0
HeapDict==1.0.1
hmmlearn==0.2.3
html5lib==1.0.1
hugdatafast==1.0.0
huggingface-hub==0.0.17
hupper==1.9.1
hydra-core==1.0.4
idna==2.10
imageio==2.6.0
imagesize==1.2.0
imgaug==0.2.6
importlib-metadata==1.5.0
importlib-resources==4.1.1
install==1.3.3
ipdb==0.13.2
ipykernel==5.1.2
ipython==7.8.0
ipython-genutils==0.2.0
ipywidgets==7.5.1
iso8601==0.1.13
isort==4.3.21
itsdangerous==1.1.0
jaraco.classes==3.1.0
jaraco.collections==3.0.0
jaraco.functools==3.0.0
jaraco.text==3.2.0
jdcal==1.4.1
jedi==0.16.0
jeepney==0.4.2
Jinja2==2.11.1
jmespath==0.9.4
joblib==0.17.0
json-tricks==3.15.2
json5==0.9.1
jsonlines==1.2.0
jsonnet==0.17.0
jsonpickle==1.4.2
jsonschema==3.0.2
jupyter==1.0.0
jupyter-client==5.3.3
jupyter-console==6.0.0
jupyter-contrib-core==0.3.3
jupyter-contrib-nbextensions==0.5.1
jupyter-core==4.5.0
jupyter-highlight-selected-word==0.2.0
jupyter-latex-envs==1.4.6
jupyter-nbextensions-configurator==0.4.1
jupyterlab==1.1.4
jupyterlab-server==1.0.6
jupyterthemes==0.20.0
Keras==2.3.1
Keras-Applications==1.0.8
Keras-Preprocessing==1.1.2
keyring==18.0.0
kiwisolver==1.1.0
langcodes==3.3.0
lazy-object-proxy==1.4.3
lesscpy==0.14.0
libarchive-c==2.8
librosa==0.7.2
lief==0.9.0
llvmlite==0.29.0
locket==0.2.0
lxml==4.5.0
Markdown==3.1.1
MarkupSafe==1.1.1
marshmallow==2.15.1
marshmallow-jsonapi==0.15.1
matplotlib==3.1.1
mccabe==0.6.1
memory-profiler==0.58.0
Metaphone==0.6
mir-eval==0.6
mistune==0.8.4
mkl-fft==1.0.14
mkl-random==1.1.0
mkl-service==2.3.0
mock==3.0.5
more-itertools==8.2.0
mpmath==1.1.0
msgpack==0.6.1
multidict==5.0.0
multipledispatch==0.6.0
multiprocess==0.70.11.1
munch==2.5.0
murmurhash==1.0.6
mypy==0.790
mypy-extensions==0.4.3
mysqlclient==1.4.6
navigator-updater==0.2.1
nbconvert==5.6.0
nbformat==4.4.0
ndlib==5.0.0
netdispatch==0.0.3
networkx==2.4
nltk==3.5
nmslib==2.0.5
nose==1.3.7
notebook==6.0.1
numba==0.45.1
numexpr==2.7.0
numpy==1.19.4
numpydoc==0.9.1
nvidia-ml-py3==7.352.0
oauthlib==3.0.1
olefile==0.46
omegaconf==2.0.5
opencv-python==4.2.0.32
openpyxl==3.0.3
opt-einsum==3.1.0
ordered-set==4.0.2
orjson==2.5.1
overrides==3.1.0
packaging==21.3
pandas==1.1.0
pandocfilters==1.4.2
parso==0.6.1
partd==1.1.0
PasteDeploy==2.1.0
path==13.1.0
pathlib2==2.3.5
pathspec==0.8.0
pathtools==0.1.2
pathy==0.6.1
patsy==0.5.1
Pattern==3.6
pbkdf2==1.3
pdfminer.six==20200124
pep517==0.10.0
pep8==1.7.1
pexpect==4.8.0
pickleshare==0.7.5
Pillow==7.0.0
pkginfo==1.5.0.1
plac==0.9.6
plaster==1.0
plaster-pastedeploy==0.7
pluggy==0.13.1
ply==3.11
portalocker==1.7.0
portend==2.6
preshed==3.0.2
pretrainedmodels==0.7.4
prettytable==1.0.1
prometheus-client==0.7.1
promise==2.3
prompt-toolkit==2.0.10
pronounceable==0.1.3
protobuf==3.13.0
psutil==5.7.0
ptyprocess==0.6.0
py==1.8.1
py-gfm==0.1.4
py-rouge==1.1
pyarrow==2.0.0
pyasn1==0.4.8
pyasn1-modules==0.2.7
pybind11==2.4.3
pycocotools==2.0
pycodestyle==2.6.0
pycosat==0.6.3
pycparser==2.19
pycrypto==2.6.1
pycryptodome==3.9.7
pycurl==7.43.0.5
pydantic==1.8.2
pyDeprecate==0.3.1
pydicom==1.4.2
pydot==1.4.1
pydub==0.24.1
pyflakes==2.1.1
pyglet==1.5.0
Pygments==2.5.2
PyGSP==0.5.1
PyJWT==1.7.1
pylint==2.4.2
Pympler==0.9
pyodbc===4.0.0-unsupported
pyonmttok==1.18.2
pyOpenSSL==19.1.0
pyparsing==2.4.7
PyQt5==5.14.2
PyQt5-sip==12.7.2
pyramid==1.10.4
pyramid-mailer==0.15.1
pyrsistent==0.15.4
pysbd==0.2.3
PySocks==1.7.1
pytest==5.2.1
pytest-arraydiff==0.3
pytest-astropy==0.5.0
pytest-doctestplus==0.4.0
pytest-forked==1.1.3
pytest-openfiles==0.4.0
pytest-remotedata==0.3.2
pytest-xdist==1.31.0
python-dateutil==2.8.1
python-docx==0.8.10
python-igraph==0.8.0
python3-openid==3.1.0
pytorch-ignite==0.1.0
pytorch-lightning==0.9.0
pytz==2019.3
PyWavelets==1.0.3
PyYAML==5.3.1
pyzmq==18.1.1
QtAwesome==0.6.0
qtconsole==4.5.5
QtPy==1.9.0
quinine==0.1.2
rapidjson==1.0.0
readme-renderer==29.0
recommonmark==0.6.0
recordclass==0.13.2
regex==2020.11.13
repoze.sendmail==4.4.1
requests==2.25.0
requests-mock==1.8.0
requests-oauthlib==1.3.0
requests-toolbelt==0.9.1
resampy==0.2.2
rezero==0.1.0
rfc3986==1.4.0
rope==0.16.0
rouge==0.3.2
rouge-score==0.0.4
rsa==3.4.2
ruamel-yaml==0.15.87
s3transfer==0.3.1
sacrebleu==2.0.0
sacremoses==0.0.49
scikit-image==0.15.0
scikit-learn==1.0.1
scipy==1.5.3
scispacy==0.2.4
seaborn==0.11.2
SecretStorage==3.1.1
selenium==3.141.0
Send2Trash==1.5.0
sentencepiece==0.1.91
sentistrength==0.0.8
sentry-sdk==0.14.3
seqeval==0.0.12
sh==1.13.1
shortuuid==1.0.1
simplegeneric==0.8.1
simpletransformers==0.22.1
singledispatch==3.4.0.3
six==1.15.0
sklearn==0.0
smart-open==5.2.1
smmap==3.0.2
snowballstemmer==2.0.0
sortedcollections==1.1.2
sortedcontainers==2.1.0
SoundFile==0.10.3.post1
soupsieve==1.9.5
spacy==3.2.1
spacy-legacy==3.0.8
spacy-loggers==1.0.1
Sphinx==2.2.0
sphinx-autodoc-typehints==1.11.0
sphinx-rtd-theme==0.5.0
sphinxcontrib-applehelp==1.0.1
sphinxcontrib-devhelp==1.0.1
sphinxcontrib-htmlhelp==1.0.2
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-qthelp==1.0.2
sphinxcontrib-serializinghtml==1.1.3
sphinxcontrib-websupport==1.2.0
spyder==3.3.6
spyder-kernels==0.5.2
SQLAlchemy==1.3.19
sqlitedict==1.6.0
srsly==2.4.2
stanza==1.1.1
statsmodels==0.10.1
strconv==0.4.2
subprocess32==3.5.4
subword-nmt==0.3.7
sympy==1.5.1
tables==3.5.2
tabulate==0.8.9
tblib==1.6.0
tempora==2.1.0
tensorboard==2.2.0
tensorboard-plugin-wit==1.6.0.post3
tensorboardX==2.0
tensorflow==2.3.1
tensorflow-datasets==2.0.0
tensorflow-estimator==2.3.0
tensorflow-metadata==0.21.1
termcolor==1.1.0
terminado==0.8.3
testpath==0.4.4
texttable==1.6.2
tfds-nightly==3.2.0.dev202007140105
thinc==8.0.13
threadpoolctl==2.1.0
tokenization==1.0.7
tokenizer==2.1.0
tokenizers==0.10.3
toml==0.10.1
toolz==0.10.0
toposort==1.5
torch==1.8.1+cu111
torch-struct==0.5
torchaudio==0.9.1
torchmetrics==0.5.1
torchtext==0.4.0
torchvision==0.9.0+cu111
tornado==6.0.3
tqdm==4.62.3
traitlets==4.3.3
transaction==3.0.0
transformers==4.11.0
translationstring==1.3
twine==3.4.1
typed-argument-parser==1.6.1
typed-ast==1.4.1
typer==0.4.0
typing-extensions==3.7.4.3
typing-inspect==0.6.0
ujson==1.35
unicodecsv==0.14.1
Unidecode==1.1.1
urllib3==1.26.2
velruse==1.1.1
venusian==3.0.0
waitress==1.4.3
wandb==0.10.12
wasabi==0.9.0
watchdog==0.10.3
# Editable Git install with no remote (wavegenie==0.0.0)
-e /juice/scr/rjcaste/curis/wavegenie
wcwidth==0.2.5
webencodings==0.5.1
WebOb==1.8.6
websocket-client==0.57.0
websocket-server==0.4
Werkzeug==1.0.0
widgetsnbextension==3.5.1
word2number==1.1
wrapt==1.11.2
WTForms==2.2.1
wtforms-recaptcha==0.3.2
wurlitzer==2.0.0
xlrd==1.2.0
XlsxWriter==1.2.7
xlwt==1.3.0
xxhash==2.0.0
yacs==0.1.6
yarl==1.6.2
zc.lockfile==2.0
zict==1.0.0
zipp==2.2.0
zope.deprecation==4.4.0
zope.interface==4.7.1
zope.sqlalchemy==1.2