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setup.cfg
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setup.cfg
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# https://gist.github.com/althonos/6914b896789d3f2078d1e6237642c35c
# --- Setuptools metadata ---------------------------------------------------
[metadata]
name = pyfastani
version = attr: pyfastani.__version__
author = Martin Larralde
author_email = martin.larralde@embl.de
url = https://github.com/althonos/pyFastANI
description = Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
long_description = file: README.md
long_description_content_type = text/markdown
license = MIT
platform = posix
keywords = bioinformatics, genomics, average, nucleotide, identity
classifier =
Development Status :: 4 - Beta
Intended Audience :: Developers
Intended Audience :: Science/Research
License :: OSI Approved :: MIT License
Operating System :: OS Independent
Programming Language :: C++
Programming Language :: Cython
Programming Language :: Python :: 3.6
Programming Language :: Python :: 3.7
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3.11
Programming Language :: Python :: 3.12
Programming Language :: Python :: Implementation :: CPython
Programming Language :: Python :: Implementation :: PyPy
Topic :: Scientific/Engineering :: Bio-Informatics
Topic :: Scientific/Engineering :: Medical Science Apps.
Typing :: Typed
project_urls =
Documentation = https://pyfastani.readthedocs.io/en/stable/
Bug Tracker = https://github.com/althonos/pyfastani/issues
Changelog = https://github.com/althonos/pyfastani/blob/master/CHANGELOG.md
Coverage = https://codecov.io/gh/althonos/pyfastani/
Builds = https://github.com/althonos/pyfastani/actions/
PyPI = https://pypi.org/project/pyfastani
Zenodo = https://doi.org/10.5281/zenodo.4940237
[options]
zip_safe = false
packages = pyfastani, pyfastani.tests, pyfastani.tests.data
python_requires = >=3.6
test_suite = pyfastani.tests
include_package_data = true
setup_requires =
setuptools >=46.4
cython ~=3.0
[options.package_data]
pyfastani = py.typed, *.pyi
pyfastani.tests = requirements.txt
[publicize_headers]
sources = vendor/FastANI/src
# --- Python tools configuration --------------------------------------------
[coverage:run]
plugins = Cython.Coverage
[coverage:report]
include = pyfastani/*.pyx
omit = pyfastani/tests/*
show_missing = true
exclude_lines =
pragma: no cover
if typing.TYPE_CHECKING:
@abc.abstractmethod
@abc.abstractproperty
raise NotImplementedError
return NotImplemented
raise UnexpectedError
raise AllocationError
[mypy]
disallow_any_decorated = true
disallow_any_generics = true
disallow_any_unimported = false
disallow_subclassing_any = false
disallow_untyped_calls = true
disallow_untyped_defs = true
ignore_missing_imports = true
warn_unused_ignores = true
warn_return_any = true