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Utility scripts related to FitHiChIP manuscript

With respect to the manuscript

Sourya Bhattacharyya, Vivek Chandra, Pandurangan Vijayanand, and Ferhat Ay, Identification of significant chromatin contacts from HiChIP data by FitHiChIP, Nature Communications, Vol 10, No 4221, 2019, DOI: https://doi.org/10.1038/s41467-019-11950-y

Here is the link of various utility scripts used in the paper:

Aggregate peak analysis (APA)

https://github.com/ay-lab/Utilities/tree/main/APA

Orientation of CTCF motif in FitHiChIP loops

https://github.com/ay-lab/Utilities/tree/main/Loop_CTCF_Orientation

Overlap of FitHiChIP loops and Venn diagram

https://github.com/ay-lab/Utilities/tree/main/Loop_Overlap_Venn

Recovery of reference HiC or HiChIP loops

https://github.com/ay-lab/Utilities/tree/main/Recovery_Plot_FitHiChIP

Recovery of reference peaks

https://github.com/ay-lab/Utilities/tree/main/Recovery_Plot_1D_Peaks