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gff3togtf or gtf2gff3 ? #124

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rlegendre opened this issue Jan 23, 2018 · 3 comments
Open

gff3togtf or gtf2gff3 ? #124

rlegendre opened this issue Jan 23, 2018 · 3 comments
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@yoann-dufresne
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in progress new converter

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@rlegendre
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http://ccb.jhu.edu/software/stringtie/gff.shtml ??
@bryan-brancotte
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From JOBIM, GFF v2 <-> GFF v3 seems importante

@yoann-dufresne
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GTF to GFF3
http://www.sequenceontology.org/cgi-bin/converter.cgi

@yoann-dufresne yoann-dufresne self-assigned this Jul 9, 2018
@Juke34
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Juke34 commented Feb 14, 2020 •
edited

Maybe this review on the different gff/gtf flavors could be of interest. I was planning to update bioperl to get all the gff / gtf conversion properly done. See Here. Otherwise currently I have a converter, working from all gtf/gff to gff1/gff2/gff2.5/gff3. See agat_sp_gxf2gxf.pl from AGAT

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@Juke34 @yoann-dufresne @rlegendre @bryan-brancotte