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In the documentation for the SelectVariants tool, it isn't clear what does -R do.
SelectVariants
-R
The documentation for the -R is empty, it is set as an optional parameter, but both examples on the page do set it.
https://gatk.broadinstitute.org/hc/en-us/articles/360036362532-SelectVariants
On the other hand, examples mentioned elsewhere ignore reference sequence when calling SelectVariants.
https://gatk.broadinstitute.org/hc/en-us/articles/360035531112--How-to-Filter-variants-either-with-VQSR-or-by-hard-filtering
The text was updated successfully, but these errors were encountered:
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In the documentation for the
SelectVariantstool, it isn't clear what does-Rdo.The documentation for the
-Ris empty, it is set as an optional parameter, but both examples on the page do set it.https://gatk.broadinstitute.org/hc/en-us/articles/360036362532-SelectVariants
On the other hand, examples mentioned elsewhere ignore reference sequence when calling
SelectVariants.https://gatk.broadinstitute.org/hc/en-us/articles/360035531112--How-to-Filter-variants-either-with-VQSR-or-by-hard-filtering
The text was updated successfully, but these errors were encountered: