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new Genbank download WDL #109

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dpark01 opened this issue Jun 10, 2020 · 0 comments
Open

new Genbank download WDL #109

dpark01 opened this issue Jun 10, 2020 · 0 comments
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@cmloreth
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2.1.4.0 2.1.8.0 2.1.8.1

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dpark01 commented Jun 10, 2020

similar to SRA download WDL -- the easy part is downloading genomes, the tricky part is fetching, parsing, and cleaning (ETL) of the metadata to a form that is useful for augur inputs
@dpark01 dpark01 created this issue from a note in 2.1.4.0 (To do) Jun 10, 2020
@dpark01 dpark01 moved this from To do to Backlog in 2.1.4.0 Jun 11, 2020
@dpark01 dpark01 added this to To do in 2.1.8.0 Jun 21, 2020
@dpark01 dpark01 moved this from To do to Backlog in 2.1.8.0 Jul 6, 2020
@dpark01 dpark01 added this to Backlog in 2.1.8.1 Jul 6, 2020
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