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WDL task samplesheet_rename_ids does not accept Illumina-style csv sample sheets #305

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tomkinsc opened this issue Jun 14, 2021 · 0 comments

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@tomkinsc
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The WDL task samplesheet_rename_ids, used by the workflow demux_deplete, fails for Illumina-style comma-delimited sample sheets (w/ header) since it expects Broad GP-style tab-delimited files.

This is the expected behavior as the task is currently written, but the task should perhaps allow Illumina-style sample sheets as illumina.py illumina_demux downstream accepts both formats.

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