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task illumina_demux does not tolerate spaces in input filenames #460

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dpark01 opened this issue Mar 29, 2023 · 0 comments
Open

task illumina_demux does not tolerate spaces in input filenames #460

dpark01 opened this issue Mar 29, 2023 · 0 comments

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@dpark01
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dpark01 commented Mar 29, 2023

As evidenced by some recent runs by Sabrina of demux_only and demux_deplete, the illumina_demux task does not currently tolerate spaces in the filename of the input samplesheet (and likely other input files).

Add more double-quoting to the WDLs.

Low urgency/priority.
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