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The run_date output from Fetch_SRA_to_BAM appears to be retrieving the wrong SRA metadata field for the run date. Take for example SRR1972917 (and similar). The run_date returned is 2020-04-29, which must have something to do with the most recent time that SRA regenerated/reprocessed the data somehow (this appears to correspond to the SRALite reprocessing). I think the field we really want might be in EXPERIMENT_PACKAGE_SET. EXPERIMENT_PACKAGE .RUN_SET.RUN.published or something like that.... should be investigated/confirmed/fixed.
The text was updated successfully, but these errors were encountered:
The
run_dateoutput fromFetch_SRA_to_BAMappears to be retrieving the wrong SRA metadata field for the run date. Take for example SRR1972917 (and similar). The run_date returned is2020-04-29, which must have something to do with the most recent time that SRA regenerated/reprocessed the data somehow (this appears to correspond to the SRALite reprocessing). I think the field we really want might be inEXPERIMENT_PACKAGE_SET. EXPERIMENT_PACKAGE .RUN_SET.RUN.publishedor something like that.... should be investigated/confirmed/fixed.The text was updated successfully, but these errors were encountered: