Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

buiild numpy Failed #1415

Open
machh opened this issue Sep 15, 2023 · 3 comments
Open

buiild numpy Failed #1415

machh opened this issue Sep 15, 2023 · 3 comments

Comments

@machh
Copy link

machh commented Sep 15, 2023

When I was build the numpy module of the javacpp-presets on the aarch64 platform,

after
mvn clean install

I encountered an error,


WARNING: Target directory /root/.javacpp/cache/cpython-3.7.7-1.5.3-linux-arm64.jar/org/bytedeco/cpython/linux-arm64/lib/python3.7/pycache already exists. Specify --upgrade to force replacement.
WARNING: Target directory /root/.javacpp/cache/cpython-3.7.7-1.5.3-linux-arm64.jar/org/bytedeco/cpython/linux-arm64/lib/python3.7/pyximport already exists. Specify --upgrade to force replacement.
WARNING: Target directory /root/.javacpp/cache/cpython-3.7.7-1.5.3-linux-arm64.jar/org/bytedeco/cpython/linux-arm64/lib/python3.7/Cython already exists. Specify --upgrade to force replacement.
WARNING: Target directory /root/.javacpp/cache/cpython-3.7.7-1.5.3-linux-arm64.jar/org/bytedeco/cpython/linux-arm64/lib/python3.7/Cython-3.0.2.dist-info already exists. Specify --upgrade to force replacement.
WARNING: Target directory /root/.javacpp/cache/cpython-3.7.7-1.5.3-linux-arm64.jar/org/bytedeco/cpython/linux-arm64/lib/python3.7/cython.py already exists. Specify --upgrade to force replacement.
WARNING: Target directory /root/.javacpp/cache/cpython-3.7.7-1.5.3-linux-arm64.jar/org/bytedeco/cpython/linux-arm64/lib/python3.7/bin already exists. Specify --upgrade to force replacement.
WARNING: You are using pip version 19.2.3, however version 23.2.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
Running from numpy source directory.
Cythonizing sources
Processing numpy/random/_bounded_integers.pxd.in
Processing numpy/random/_pcg64.pyx
warning: /home/javacpp-presets-1.5.3/numpy/cppbuild/linux-arm64/numpy-1.18.2/numpy/init.pxd:17:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310

Error compiling Cython file:

...
def init(self, seed=None):
BitGenerator.init(self, seed)
self.rng_state.pcg_state = &self.pcg64_random_state

    self._bitgen.state = <void *>&self.rng_state
    self._bitgen.next_uint64 = &pcg64_uint64
                               ^

_pcg64.pyx:113:35: Cannot assign type 'uint64_t (*)(void ) except? -1 nogil' to 'uint64_t ()(void *) noexcept nogil'. Exception values are incompatible. Suggest adding 'noexcept' to type 'uint64_t (void *) except? -1 nogil'.
Traceback (most recent call last):
File "/home/javacpp-presets-1.5.3/numpy/cppbuild/linux-arm64/numpy-1.18.2/tools/cythonize.py", line 238, in
main()
File "/home/javacpp-presets-1.5.3/numpy/cppbuild/linux-arm64/numpy-1.18.2/tools/cythonize.py", line 234, in main
find_process_files(root_dir)
File "/home/javacpp-presets-1.5.3/numpy/cppbuild/linux-arm64/numpy-1.18.2/tools/cythonize.py", line 225, in find_process_files
process(root_dir, fromfile, tofile, function, hash_db)
File "/home/javacpp-presets-1.5.3/numpy/cppbuild/linux-arm64/numpy-1.18.2/tools/cythonize.py", line 191, in process
processor_function(fromfile, tofile)
File "/home/javacpp-presets-1.5.3/numpy/cppbuild/linux-arm64/numpy-1.18.2/tools/cythonize.py", line 81, in process_pyx
[sys.executable, '-m', 'cython'] + flags + ["-o", tofile, fromfile])
File "/root/.javacpp/cache/cpython-3.7.7-1.5.3-linux-arm64.jar/org/bytedeco/cpython/linux-arm64/lib/python3.7/subprocess.py", line 363, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/root/.javacpp/cache/cpython-3.7.7-1.5.3-linux-arm64.jar/org/bytedeco/cpython/linux-arm64/bin/python3.7', '-m', 'cython', '-3', '--fast-fail', '-o', '_pcg64.c', '_pcg64.pyx']' returned non-zero exit status 1.
Traceback (most recent call last):
File "setup.py", line 488, in
setup_package()
File "setup.py", line 469, in setup_package
generate_cython()
File "setup.py", line 275, in generate_cython
raise RuntimeError("Running cythonize failed!")
RuntimeError: Running cythonize failed!
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE

Moreover, it seems that cpython has already been build successfully.

CPYTHON_PATH is :
/home/javacpp-presets-1.5.3/numpy/cppbuild/linux-arm64/../../../cpython/cppbuild/linux-arm64/

and

ll /home/javacpp-presets-1.5.3/numpy/cppbuild/linux-arm64/../../../cpython/cppbuild/linux-arm64/
total 28
drwxr-xr-x 19 501 501 4096 Sep 15 07:39 Python-3.7.7
drwxr-xr-x 2 root root 4096 Sep 15 07:39 bin
drwxr-xr-x 6 root root 4096 Sep 15 07:38 host
drwxr-xr-x 4 root root 4096 Sep 15 07:39 include
drwxr-xr-x 5 root root 4096 Sep 15 07:39 lib
drwxrwxr-x 18 root root 4096 Sep 15 07:38 openssl-1.1.1f
drwxr-xr-x 3 root root 4096 Sep 15 07:39 share`

@saudet
Copy link
Member

saudet commented Sep 15, 2023 via email

@machh
Copy link
Author

machh commented Sep 15, 2023

@saudet
thanks for your reply.

Cython and NumPy are both modules under the javacpp-presets-1.5.3 project, and Cython has also been compiled from javacpp-presets-1.5.3 cppbuild.sh script.

So, how should I solve this problem?

@saudet
Copy link
Member

saudet commented Sep 15, 2023

I'd recommend using the latest version of NumPy

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

2 participants