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Releases: cctbx/cctbx_project

2023.7

31 Jul 23:38
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  • Initial support for handling longer residue names in mmCIF
  • Improved handling of real-space maps with unexpected metadata for the
    origin and cell angles
  • Improvements to reduce2 and probe2
  • Reorganization of quantum mechanical restraints

2023.6

30 Jun 21:48
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  • Basic space group check when reading mmCIF
  • Fix hybrid36 output in mmCIF
  • Updates to lists of modified amino and nucleic acids
  • DataManager updates for handling multiple uses (types) for generating fmodel

2023.5

01 Jun 19:02
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  • DataManager updates for handling multiple uses (types) of models and Miller arrays
  • DataManager updates for handling priority of amplitudes and intensities
  • Migration from using any_file when file type is already known
  • Start checking atom names of non-standard amino acids

2023.4

01 May 16:05
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  • Prevent potenially large memory usage when trying to read reflection data
  • CCTBXParser fix to properly re-raise an error when parsing PHIL
  • DataManager fix for handling datatypes with parent classes
  • Improved water picking
  • Improved atom selections to handle more than 10k atoms

2023.3

03 Apr 16:28
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  • Bug fixes for RNA validation
  • Improved handling of B and pLDDT values in mmtbx.process_predicted_model
  • Bug fixes for validating C-beta deviations for D-amino acids
  • Bug fixes and improvements to cctbx.HKLviewer

2023.2

28 Feb 23:22
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  • Improved modeling of histidine protonation states
  • Improved tool for merging models
  • Added resolution estimation for map docking (prepare_map_for_docking)
  • Bug fixes and improvements to cctbx.HKLviewer

2023.1

01 Feb 03:37
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  • Enable rounding of occupancies so that the sum is equal to 1
  • New tool to validate torsions
  • Bug fixes and improvements to cctbx.HKLviewer

2022.12

02 Jan 11:57
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  • New code for fitting histidine
  • DataManager can map scattering table types to data types

2022.11

02 Dec 21:01
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  • Improved occupancy handling of multiple conformations so that the sum does not exceed 1
  • Improvements to reduce2 and probe2 tools for MolProbity

2022.10

02 Nov 18:26
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  • Added array selection via data labels to CCTBXParser

    • Match partial labels to full labels in data file
    • Combine multiple label selections via the command line
  • Allow mosaic buil solvent model to have initial values

  • Fix bug where atoms may be missing in a super-sphere

  • Bug fixes and improvements to cctbx.HKLviewer

  • Switch to using libsvm-official for Python interface from libsvm