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make germline-filter module more robust #67

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lincoln-harris opened this issue May 28, 2020 · 2 comments
Open

make germline-filter module more robust #67

lincoln-harris opened this issue May 28, 2020 · 2 comments
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enhancement New feature or request

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@lincoln-harris
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lincoln-harris commented May 28, 2020 •
edited

right now it only works if you have a metadata file with a very specific format

cell_id,patient_id
sample1,gl_sample1
sample2,gl_sample1
sample3,gl_sample2
sample4,gl_sample2
sample5,gl_sample2

would be nice if we could loosen up this requirement a bit. for example, what if you had germline vcfs for some experimental samples but not all?
@lincoln-harris lincoln-harris added the enhancement New feature or request label May 28, 2020
@lincoln-harris
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replace cell_id and patient_id with more descriptive ids

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lincoln-harris commented May 29, 2020 •
edited

partially addressed with 7a5538e

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