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New format for CopasiML for continuous, discrete, and hybrid simulations of biochemical reaction networks #702

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jonrkarr opened this issue May 26, 2021 · 0 comments · May be fixed by #716
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concept/term addition Request for a new concept(s), or change(s) to existing concept(s)
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@jonrkarr
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Format name: COPASI Markup Language

Short description: Format for continuous, discrete, and hybrid simulations of biochemical reaction networks.

Parent URI(s): format_2332|format_2013

Is Format Of:

exactSynonym(s): CopasiML

Specification: http://copasi.org/Support/Technical_Documentation/File_Format/

Documentation: http://copasi.org/Support/Technical_Documentation/File_Format/

Wikipedia: https://en.wikipedia.org/wiki/COPASI

Publication: 10.1016/j.jbiotec.2017.06.1200|10.1007/978-1-59745-525-1_2|10.1093/bioinformatics/btl485|10.5555/1218112.1218421

Data represented: data_3241|data_3869

File extension(s): cps

Example(s): https://github.com/copasi/COPASI/tree/develop/speed-test-suite

Information standard(s): https://co.mbine.org/standards/miase

Ontologies used: http://www.ebi.ac.uk/sbo/

Governing organisation(s):

Media type: application/x-copasi

Comment: I left Is Format Of blank. I'm not sure how this is different from Data represented

@jonrkarr jonrkarr changed the title New format for CopasiML format for continuous, discrete, and hybrid simulations of biochemical reaction networks New format for CopasiML for continuous, discrete, and hybrid simulations of biochemical reaction networks May 26, 2021
@matuskalas matuskalas added this to To do in release 1.26 May 27, 2021
@matuskalas matuskalas added this to the 1.26 milestone May 27, 2021
@raashika03 raashika03 linked a pull request Jun 4, 2021 that will close this issue
@matuskalas matuskalas added the concept/term addition Request for a new concept(s), or change(s) to existing concept(s) label Dec 17, 2021
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