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New format mzTab-M #784

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Tracked by #374
cb2993 opened this issue Dec 2, 2021 · 3 comments · May be fixed by #796
Open
Tracked by #374

New format mzTab-M #784

cb2993 opened this issue Dec 2, 2021 · 3 comments · May be fixed by #796
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concept/term addition Request for a new concept(s), or change(s) to existing concept(s)

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@cb2993
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cb2993 commented Dec 2, 2021

Format name: < mzTab-M >
Short description: < A flexible tab-delimited reporting data standard file format for sharing quantitative mass spectrometry metabolomics/lipodomics results. It contains the ability to represent “intermediate” or supporting data, including the evidence trail for identifications from software (scores or statistics), as well as the quantification values derived directly from MS: i.e., prior to any adduct grouping or summarization steps. It is an expansion/improvement of mzTab.>
Parent URI(s): < http://edamontology.org/format_3245 | http://edamontology.org/format_3681 >
exactSynonym(s): < >
Specification: < >
Documentation: < https://github.com/HUPO-PSI/mzTab/blob/master/specification_document-releases/2_0-Metabolomics-Release/mzTab_format_specification_2_0-M_release.adoc >
Wikipedia: < >
Publication: < doi: 10.1021/acs.analchem.8b04310 >
Data represented: < http://edamontology.org/data_2536 >
File extension(s): < mztab >
Example(s): < https://github.com/HUPO-PSI/mzTab/wiki/Examples | https://apps.lifs.isas.de/mztabvalidator/ >
Information standard(s): < >
Ontologies used: < >
Governing organisation(s): < https://www.hupo.org/ | @HUPO-PSI>
Media type: < >
Comment: < The exact version is mzTab-M 2.0. A reference implementation in JAVA is available at https://github.com/lifs-tools/jmzTab-m. @HUPO-PSI>

@matuskalas
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Thank you so much for the request @cb2993! 🙏🏽 We'll try to add it asap.

@matuskalas matuskalas added the concept/term addition Request for a new concept(s), or change(s) to existing concept(s) label Dec 8, 2021
@matuskalas
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Or are you making a PR adding this @cb2993? That would of course be even better and super appreciated! 🙌🏽

@cb2993 cb2993 linked a pull request Dec 15, 2021 that will close this issue
@matuskalas matuskalas linked a pull request Dec 16, 2021 that will close this issue
@nilshoffmann
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@matuskalas @cb2993 What is the status on mzTab-M? Is there anything more to do before it can be added?

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