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ChangeLog
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2024-05-13 Dirk Eddelbuettel <edd@debian.org>
* README.md: Document BioConductor 3.19 support across all three
supported releases (now that 22.04 and 20.04 both caught up)
2024-05-12 Dirk Eddelbuettel <edd@debian.org>
* README.md: Document 24.04 support
* inst/scripts/add_cranapt_noble.sh: Add new 24.04 install script
2024-05-11 Dirk Eddelbuettel <edd@debian.org>
* R/package.R (.get_source_file): Always download source file if
'force' and 'compile' are set
* R/controlFiles.R (.addDepends): Refine one regular expression
2024-05-10 Dirk Eddelbuettel <edd@debian.org>
* R/init.R: Support Ubuntu 24.04
* R/package.R: Idem
* inst/scripts/add_cranapt_noble.sh: Idem
* docker/noble/*: Build and run-time support for 24.04
2024-04-12 Dirk Eddelbuettel <edd@debian.org>
* R/init.R (.loadRuntimedepends): Support run-time dependency
declarations via config file
* R/controlFiles.R (.addDepends): Show run-time dependencies
* R/package.R (buildPackage): Source run-time dependency file
2024-03-25 Dirk Eddelbuettel <edd@debian.org>
* README.md: Update usage numbers and charts
2024-02-23 Dirk Eddelbuettel <edd@debian.org>
* vignettes/FAQ.md: Expanded FAQ, link FAQ from ToC
2024-02-16 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: More consistent color use
2024-02-12 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Package version display small correction, display
source repo more prominently
2024-02-11 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Package version display tweak
2024-02-09 Dirk Eddelbuettel <edd@debian.org>
* README.md: Update usage counts
2023-12-18 Dirk Eddelbuettel <edd@debian.org>
* README.md: Document r2u use in GitHub Actions
2023-12-12 Dirk Eddelbuettel <edd@debian.org>
* README.md: Updated totals and count
2023-11-11 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Add new '--compile' flag to force source build
2023-11-10 Dirk Eddelbuettel <edd@debian.org>
* repo: Rebuilt a number of packages following Matrix update
following discussion and analysis with Mikael Jagan
2023-11-05 Dirk Eddelbuettel <edd@debian.org>
* repo: Expanded BioConductor support adding over 100 packages
2023-11-04 Dirk Eddelbuettel <edd@debian.org>
* README.md: Mention R 4.3.2 is now the R version used and provided,
update package counts from CRAN and BioConductor
* repo: Rebuild of BioConductor packages for 3.18 release
2023-10-09 Dirk Eddelbuettel <edd@debian.org>
* R/package.R (buildPackage): Support new argument 'dryrun'
2023-09-02 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Extended to also update BioConductor packages
* R/init.R: Idem
2023-08-20 Dirk Eddelbuettel <edd@debian.org>
* README.md: Small edits and minor clarification
2023-08-16 Dirk Eddelbuettel <edd@debian.org>
* R/init.R (.setOptions): Set timeout to 180
2023-08-15 Dirk Eddelbuettel <edd@debian.org>
* README.md: A few edits throughout
2023-08-13 Dirk Eddelbuettel <edd@debian.org>
* docs/*: Added new vignette on 'codespaces'
2023-08-12 Dirk Eddelbuettel <edd@debian.org>
* .devcontainers/*: Adding documentation for Devcontainer use
2023-08-09 Dirk Eddelbuettel <edd@debian.org>
* R/init.R (.setOptions): Set timeout to 300
2023-06-03 Dirk Eddelbuettel <edd@debian.org>
* repo: The metadata for focal (20.04) has been adjusted so packages
`sf`, `gdalraster` and `FIESTA` are now available as on 22.04
2023-05-11 Dirk Eddelbuettel <edd@debian.org>
* .gitpod.Dockerfile: Update to rocker/r2u:jammy
* .gitpod.yml (vscode): Update to REditorSupport.r@2.8.0
2023-05-09 Dirk Eddelbuettel <edd@debian.org>
* repo: Several packages using the Graphics API of R itself have been
rebuilt for R 4.3.0 and its 'soft' API change
2023-04-29 Dirk Eddelbuettel <edd@debian.org>
* repo: Rebuild of BioConductor packages for 3.17 release
2023-04-25 Dirk Eddelbuettel <edd@debian.org>
* README.md: Mention R 4.3.0 is now the R version used
2023-04-14 Dirk Eddelbuettel <edd@debian.org>
* README.md: Mention rocker/r2u containers
2022-12-25 Dirk Eddelbuettel <edd@debian.org>
* docs/mkdmt-src/src/vignettes/FAQ.md: Mention that non-LTS releases
can use the LTS repos just fine.
2022-11-19 Dirk Eddelbuettel <edd@debian.org>
* inst/NEWS.Rd: Make release 0.0.4 with BioConductor 3.16
2022-09-18 Dirk Eddelbuettel <edd@debian.org>
* README.md: Mention that Docker build cannot use bspm as the
security setting used at run-time is not available during build time
* inst/docs/FAQ.md: Idem
2022-09-16 Dirk Eddelbuettel <edd@debian.org>
* README.md: Mention the new mirror r2u.stat.illinois.edu
* inst/scripts/add_cranapt_focal.sh: Use r2u.stat.illinois.edu
* inst/scripts/add_cranapt_jammy.sh: Idem
* docker/focal/run/cranapt.list: Idem
* docker/jammy/run/cranapt.list: Idem
2022-09-14 John Blischak <jdblischak@gmail.com>
* inst/scripts/add_cranapt_jammy.sh: Add missing 'apt update'
2022-09-11 Dirk Eddelbuettel <edd@debian.org>
* README.md: Update to state 'current R' via CRAN apt repo
* inst/scripts/add_cranapt_focal.sh: Idem
* inst/scripts/add_cranapt_jammy.sh: Idem
2022-09-08 Dirk Eddelbuettel <edd@debian.org>
* README.md: Update package number
2022-08-01 Dirk Eddelbuettel <edd@debian.org>
* inst/dockerize/Dockerfile: Add 'dockerize' example
* inst/dockerize/README.md: Short description
2022-07-12 Dirk Eddelbuettel <edd@debian.org>
* R/controlFiles.R (.addDepends): Special-case 'rJava' which does not
resolve its shared library given that Java libs are hidden
2022-07-07 Dirk Eddelbuettel <edd@debian.org>
* R/init.R (.loadDB, .loadAP): Make cache age a function parameter
2022-06-18 Dirk Eddelbuettel <edd@debian.org>
* README.md (Pinning): Refined setup with origin and label
* inst/scripts/add_cranapt_{focal,jammy}.sh: Idem
* docker/{focal,jammy}/{build,run}: Idem
2022-06-17 Dirk Eddelbuettel <edd@debian.org>
* R/package.R (buildPackage): Correct nlme and foreign download
2022-06-08 Dirk Eddelbuettel <edd@debian.org>
* inst/docs/FAQ.md: Add entry on Singularity
2022-06-06 Dirk Eddelbuettel <edd@debian.org>
* R/controlFiles.R: Accomodate sp with epoch
* README.md: Edits
2022-06-02 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Accomodate dash-to-dot in nlme and foreign versions
2022-06-01 Dirk Eddelbuettel <edd@debian.org>
* R/controlFiles.R: Accomodate dash-to-dot in foreign version
2022-05-31 Dirk Eddelbuettel <edd@debian.org>
* inst/docs/FAQ.md: Draft of two new entries
2022-05-29 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Correct two invisible calls
* R/controlFiles.R: Accomodate dash-to-dot in nlme version
2022-05-28 Sergio Oller <sergioller@gmail.com>
* README.md: Add missing double-quote in example
2022-05-25 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Support per-distribution blacklist
* R/init.R: Idem
* docker/focal/run/Dockerfile: Note '--security-opt
seccomp=unconfined' needed for bspm use
2022-05-22 Dirk Eddelbuettel <edd@debian.org>
* README.md: Reword headline
2022-05-21 Dirk Eddelbuettel <edd@debian.org>
* inst/scripts/add_cranapt_focal.sh: Use CRAN repo for R
* README.md: Ditto
2022-05-20 Dirk Eddelbuettel <edd@debian.org>
* R/controlFiles.R: Reflect repo in Description:
2022-05-17 Dirk Eddelbuettel <edd@debian.org>
* R/controlFiles.R: Build and cache in per distro dir
* R/package.R: Ditto
* docker/*/build/debBuild.sh: Add dist argument
* README.md: Update package numbers
2022-05-15 Dirk Eddelbuettel <edd@debian.org>
* R/controlFiles.R: Correct base package list
* R/init.R: Filter commented lines from blacklist
* R/package.R: New helper to identify updated packages
2022-05-13 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: New top-level function to build updated packages
* R/init.R: Support
* man/buildPackage.Rd: Docs
* README.md: Update package numbers
2022-05-11 Dirk Eddelbuettel <edd@debian.org>
* README.md: Switch instruction to downloading keys and storing in
/etc/apt/trusted.gpg.d/ which is now preferred, additional edits
2022-05-09 Dirk Eddelbuettel <edd@debian.org>
* inst/scripts/add_cranapt_jammy.sh: Update key use
* R/init.R: Correct a cached=file time comparison
2022-05-08 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Add nDeps
* docker/jammy/run/Dockerfile: Use asc key file
* .gitpod.Dockerfile: Switch to 22.04
2022-05-07 Dirk Eddelbuettel <edd@debian.org>
* README.md: Updated docs
* docs/*: Idem
* docker/jammy/build/*: Use http instead of mount for pinning
* docker/jammy/build/debBuild.sh: Call dpkg-buildpackage with -b
* inst/scripts/add_cranapt_focal.sh: Renamed from add_cranapt.sh
* inst/scripts/add_cranapt_jammy.sh: Added
2022-05-06 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Support building for multiple LTS releases
* R/init.R: Idem, skip test for R >= 4.0, two-tiered depends
* DESCRIPTION: Depend on R >= 4.0
2022-05-04 Dirk Eddelbuettel <edd@debian.org>
* R/package.R: Simpler interface
* inst/examples/add_cranapt.sh: Renamed from setup_r2u.sh
* README.md: Documentation updates
2022-05-03 Dirk Eddelbuettel <edd@debian.org>
* Initial version