diff --git a/lib/init/autoconfig.js b/lib/init/autoconfig.js
index 0ace177aa16..19d016a54c1 100644
--- a/lib/init/autoconfig.js
+++ b/lib/init/autoconfig.js
@@ -85,7 +85,7 @@ class Registry {
      * @returns {void}
      */
     populateFromCoreRules() {
-        const rulesConfig = configRule.createCoreRuleConfigs();
+        const rulesConfig = configRule.createCoreRuleConfigs(/* noDeprecated = */ true);
 
         this.rules = makeRegistryItems(rulesConfig);
     }
diff --git a/tests/lib/init/autoconfig.js b/tests/lib/init/autoconfig.js
index 1fa2b0476de..3db6a63645f 100644
--- a/tests/lib/init/autoconfig.js
+++ b/tests/lib/init/autoconfig.js
@@ -132,6 +132,20 @@ describe("autoconfig", () => {
                 assert.include(Object.keys(registry.rules), "eqeqeq");
             });
 
+            it("should not add deprecated rules", () => {
+                const registry = new autoconfig.Registry();
+
+                registry.populateFromCoreRules();
+
+                const { rules } = registry;
+
+                assert.notProperty(rules, "id-blacklist");
+                assert.notProperty(rules, "no-negated-in-lhs");
+                assert.notProperty(rules, "no-process-exit");
+                assert.notProperty(rules, "no-spaced-func");
+                assert.notProperty(rules, "prefer-reflect");
+            });
+
             it("should not add duplicate rules", () => {
                 const registry = new autoconfig.Registry(rulesConfig);
 
diff --git a/tests/lib/init/config-initializer.js b/tests/lib/init/config-initializer.js
index d607ccff52f..cb9162e2d5c 100644
--- a/tests/lib/init/config-initializer.js
+++ b/tests/lib/init/config-initializer.js
@@ -409,6 +409,14 @@ describe("configInitializer", () => {
                 assert.notProperty(config.rules, "no-debugger");
             });
 
+            it("should not include deprecated rules", () => {
+                assert.notProperty(config.rules, "id-blacklist");
+                assert.notProperty(config.rules, "no-negated-in-lhs");
+                assert.notProperty(config.rules, "no-process-exit");
+                assert.notProperty(config.rules, "no-spaced-func");
+                assert.notProperty(config.rules, "prefer-reflect");
+            });
+
             it("should support new ES features if using later ES version", () => {
                 const filename = getFixturePath("new-es-features");