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for project mode currently, there is a workaround to include non web dependencies:
Add in lib/external all the jar files (you can get all the jar files depencies through Maven or Gradle in another project)
Go to the lib/external and after "generate" the stuff for flix.toml: e.g. in lib/external command line: println ""%s" = "url:https://dummy.org/anonymous.jar\"\n " $(ls -1 *.jar)
Copy paste in the [jar-dependencies] the result of the command above
You should have something like:
[jar-dependencies]
"foo.jar" = "url:https://dummy.org/anonymous.jar"
"bar.jar" = "url:https://dummy.org/anonymous.jar"
etc...
(the compiler checks if the files mentionned in flix.toml are in lib/external or not. If not Flix tries to download them)
folder mode includes arbitrary deps in libs/ folder while project mode does not.
Two issues
file://...
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