Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

More default channel colors #1229

Open
manthey opened this issue Jun 29, 2023 · 1 comment
Open

More default channel colors #1229

manthey opened this issue Jun 29, 2023 · 1 comment

Comments

@manthey
Copy link
Member

manthey commented Jun 29, 2023

We currently have a few default channel colors. We should add more based on channel names.

We should add: gray/grey => #fff, red/green/blue => #f00/#0f0/#00f

We can also add various fluorescence channels. In general, these colors should be the closest color we have in the current present list to the color of the emission wavelength of that fluorescence method. For instance, the CD* channels are listed here: https://www.abcam.com/primary-antibodies/human-cd-antigen-guide and here: https://en.wikipedia.org/wiki/List_of_human_clusters_of_differentiation. Their emission wavelengths can be looked up by searching for them via something like "CD4 emission wavelength". I found some of them here: https://www.aatbio.com/fluorescence-excitation-emission-spectrum-graph-viewer . Besides the CD antigens, we've seen a few others (see some of the example files).

We want to only have fairly "primary" colors, rather than very specific colors per channel; the reason for this is to attempt to avoid near-duplicates.

@manthey
Copy link
Member Author

manthey commented Jun 29, 2023

When someone gets around to working on this, we can get a list of all the channel names we've extracted from our various test files as a reference of names we might want to research.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant