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Example1.xml
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Example1.xml
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<?xml version="1.0" encoding="utf-8"?>
<executable>
<category>Developer Tools</category>
<title>Example 1 - Execution Model Tour</title>
<description><![CDATA[Shows one of each type of parameter that slicer_cli_web can handle.]]></description>
<version>0.1.0.$Revision$(alpha)</version>
<documentation-url>http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/ExecutionModelTour</documentation-url>
<license/>
<contributor>Daniel Blezek (GE), Bill Lorensen (GE)</contributor>
<acknowledgements><![CDATA[This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. It has been modified for slicer_cli_web.]]></acknowledgements>
<parameters>
<label>Scalar Parameters</label>
<description><![CDATA[Variations on scalar parameters]]></description>
<integer>
<name>integerVariable</name>
<flag>-i</flag>
<longflag>--integer</longflag>
<description><![CDATA[An integer without constraints]]></description>
<label>Integer Parameter</label>
<default>30</default>
</integer>
<double>
<name>doubleVariable</name>
<flag>-d</flag>
<longflag>--double</longflag>
<description><![CDATA[A double with constraints]]></description>
<label>Double Parameter</label>
<default>30</default>
<constraints>
<minimum>0</minimum>
<maximum>1.e3</maximum>
<step>10</step>
</constraints>
</double>
<region shapes="rectangle,polygon,polyline,point,multi,submitoff">
<name>region</name>
<label>Analysis ROI</label>
<longflag>region</longflag>
<description>Region of interest where analysis is performed. This is either -1,-1,-1,-1 for the whole image, or a four-element vector in the format "left, top, width, height", or a list of four or more x,y vertices to specify a polygon.</description>
<default>-1,-1,-1,-1</default>
</region>
</parameters>
<parameters advanced="true">
<label>Advanced Parameters</label>
<description>Parameters that are advanced</description>
<integer>
<name>advancedIntegerVariable</name>
<longflag>--advinteger</longflag>
<description>An integer without constraints</description>
<label>Advanced Integer Parameter</label>
<default>35</default>
</integer>
</parameters>
<parameters>
<label>Vector Parameters</label>
<description><![CDATA[Variations on vector parameters]]></description>
<float-vector>
<name>floatVector</name>
<flag>f</flag>
<description><![CDATA[A vector of floats]]></description>
<label>Float Vector Parameter</label>
<default>1.3,2,-14</default>
</float-vector>
<string-vector>
<name>stringVector</name>
<longflag>string_vector</longflag>
<description><![CDATA[A vector of strings]]></description>
<label>String Vector Parameter</label>
<default>foo,bar,foobar</default>
</string-vector>
</parameters>
<parameters>
<label>Enumeration Parameters</label>
<description><![CDATA[Variations on enumeration parameters]]></description>
<string-enumeration>
<name>stringChoice</name>
<flag>e</flag>
<longflag>enumeration</longflag>
<description><![CDATA[An enumeration of strings]]></description>
<label>String Enumeration Parameter</label>
<default>Bill</default>
<element>Ron</element>
<element>Eric</element>
<element>Bill</element>
<element>Ross</element>
<element>Steve</element>
<element>Will</element>
</string-enumeration>
<string datalist="{"stringWithOptions": "__datalist__", "arg0": "skip", "arg1": "skip", "arg1_folder": "skip"}">
<name>stringWithOptions</name>
<longflag>string_with_options</longflag>
<description>A string with options that are listed from the CLI itself</description>
<label>String With Options</label>
<default></default>
</string>
</parameters>
<parameters advanced="true">
<label>Girder API URL and Key</label>
<description>A Girder API URL and token for Girder client</description>
<string>
<name>girderApiUrl</name>
<longflag>api-url</longflag>
<label>Girder API URL</label>
<description>A Girder API URL (e.g., https://girder.example.com:443/api/v1)</description>
<default></default>
</string>
<string>
<name>girderToken</name>
<longflag>girder-token</longflag>
<label>Girder Token</label>
<description>A Girder token</description>
<default></default>
</string>
</parameters>
<parameters>
<label>Boolean Parameters</label>
<description><![CDATA[Variations on boolean parameters]]></description>
<boolean>
<name>boolean1</name>
<longflag>boolean1</longflag>
<description><![CDATA[A boolean default true]]></description>
<label>Boolean Default true</label>
<default>true</default>
</boolean>
<boolean>
<name>boolean2</name>
<longflag>boolean2</longflag>
<description><![CDATA[A boolean default false]]></description>
<label>Boolean Default false</label>
<default>false</default>
</boolean>
<boolean>
<name>boolean3</name>
<longflag>boolean3</longflag>
<description><![CDATA[A boolean with no default, should be defaulting to false]]></description>
<label>Boolean No Default</label>
</boolean>
</parameters>
<parameters>
<label>File, Directory and Image Parameters</label>
<description><![CDATA[Parameters that describe files and directories.]]></description>
<file fileExtensions=".png,.jpg,.jpeg,.bmp,.tif,.tiff,.gipl,.dcm,.dicom,.nhdr,.nrrd,.mhd,.mha,.mask,.hdr,.nii,.nii.gz,.hdr.gz,.pic,.lsm,.spr,.vtk,.vtkp,.vtki,.stl,.csv,.txt,.xml,.html" defaultNameMatch="\.png$" defaultPathMatch="^\/user\/.*\/[Ii]mages\/.*\.png$">
<name>file1</name>
<longflag>file1</longflag>
<description><![CDATA[An input file]]></description>
<label>Input file</label>
<channel>input</channel>
</file>
<file fileExtensions=".png" reference="_girder_id_" defaultNameMatch="\.png$" defaultPathMatch="^\/user\/.*\/[Ii]mages\/.*\.png$" defaultRelativePath="..">
<name>file2</name>
<longflag>file2</longflag>
<description>Another input file</description>
<label>Input file 2</label>
<channel>input</channel>
</file>
<file fileExtensions=".png,.jpg,.jpeg,.bmp,.tif,.tiff,.gipl,.dcm,.dicom,.nhdr,.nrrd,.mhd,.mha,.mask,.hdr,.nii,.nii.gz,.hdr.gz,.pic,.lsm,.spr,.vtk,.vtkp,.vtki,.stl,.csv,.txt,.xml,.html" multiple="true">
<name>files</name>
<longflag>files</longflag>
<description><![CDATA[Multiple input files]]></description>
<label>Input files</label>
<channel>input</channel>
</file>
<directory>
<name>directory1</name>
<longflag>directory1</longflag>
<description><![CDATA[An input directory. If no default is specified, the current directory is used,]]></description>
<label>Input directory</label>
<channel>input</channel>
</directory>
<image>
<name>image1</name>
<longflag>image1</longflag>
<description><![CDATA[An input image]]></description>
<label>Input image</label>
<channel>input</channel>
</image>
<image>
<name>image2</name>
<longflag>image2</longflag>
<description><![CDATA[An output image]]></description>
<label>Output image</label>
<channel>output</channel>
</image>
<item>
<name>item1</name>
<longflag>item1</longflag>
<description>An input item</description>
<label>Input item</label>
<channel>input</channel>
</item>
</parameters>
<parameters>
<label>Index Parameters</label>
<description><![CDATA[Variations on parameters that use index rather than flags.]]></description>
<image>
<name>arg0</name>
<channel>input</channel>
<index>0</index>
<description><![CDATA[First index argument is an image]]></description>
<label>First index argument</label>
</image>
<image>
<name>arg1</name>
<channel>output</channel>
<index>1</index>
<description><![CDATA[Second index argument is an image]]></description>
<label>Second index argument</label>
</image>
</parameters>
<parameters>
<label>Simple return types</label>
<description>Simple outputs</description>
<integer>
<name>anintegerreturn</name>
<label>An integer return value</label>
<channel>output</channel>
<default>5</default>
<description><![CDATA[An example of an integer return type]]></description>
</integer>
<boolean>
<name>abooleanreturn</name>
<label>A boolean return value</label>
<channel>output</channel>
<default>false</default>
<description><![CDATA[An example of a boolean return type]]></description>
</boolean>
<float>
<name>afloatreturn</name>
<label>A floating point return value</label>
<channel>output</channel>
<default>7.0</default>
<description><![CDATA[An example of a float return type]]></description>
</float>
<double>
<name>adoublereturn</name>
<label>A double point return value</label>
<channel>output</channel>
<default>14.0</default>
<description><![CDATA[An example of a double return type]]></description>
</double>
<string>
<name>astringreturn</name>
<label>A string return value</label>
<channel>output</channel>
<default>Hello</default>
<description><![CDATA[An example of a string return type]]></description>
</string>
<integer-vector>
<name>anintegervectorreturn</name>
<label>An integer vector return value</label>
<channel>output</channel>
<default>1,2,3</default>
<description><![CDATA[An example of an integer vector return type]]></description>
</integer-vector>
<string-enumeration>
<name>astringchoicereturn</name>
<channel>output</channel>
<description><![CDATA[An enumeration of strings as a return type]]></description>
<label>A string enumeration return value</label>
<default>Bill</default>
<element>Ron</element>
<element>Eric</element>
<element>Bill</element>
<element>Ross</element>
<element>Steve</element>
<element>Will</element>
</string-enumeration>
</parameters>
</executable>