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Thanks for opening an issue! Unfortunately this falls under problems with the underlying yaml parser, which I can't easily address in the near future for reasons explained in this post.
To clarify, the issues I have tagged with this label are all around the way the yaml library is used. It isn't necessarily designed for the way yamlfmt uses it, which is putting yaml in and right back out, so there are a number of cases where the emitter decides to output things in weird ways. I've fixed a few of those types of issues in my fork but they are tricky and take a lot of time.
nested arrays are flattened:
tested with v0.11.0
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