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Visualization of mcool HiC data #1132

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IsabelPR93 opened this issue Oct 28, 2022 · 1 comment
Open

Visualization of mcool HiC data #1132

IsabelPR93 opened this issue Oct 28, 2022 · 1 comment

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@IsabelPR93
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Hi,
I am new to HiGlass (I have frequently worked with Juicebox and WashU browser) and trying to use it to visualise some published HiC data made available by the authors in a mcool format.
As far as I am able to understand the online browser version does not support this data format? I have tried uploading the mcool files with no luck.
I hope you can help me visualise this data in the most uncomplicated and fast way possible.
Thank you very much in advance!

@pkerpedjiev
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Hey, sorry for the delayed response. You need to add the files using the command line before you can view them in the browser.

See the tutorial for an example.

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