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cannot import my data to higlass- higlass.client problem #1191

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shdemah opened this issue Jan 11, 2024 · 1 comment
Open

cannot import my data to higlass- higlass.client problem #1191

shdemah opened this issue Jan 11, 2024 · 1 comment

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@shdemah
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shdemah commented Jan 11, 2024

Commit:
I am trying to upload my mcool to higlass using jupyter notebook with the following command:
import higlass
import higlass.client as hgc
import higlass.tilesets as hgti

ts1 = hgti.cooler('../data/AT_control_Rep1.1000.mcool')
tr1 = hgc.Track('heatmap', tileset=ts1)
view1 = hgc.View([tr1])
(display, server, viewconf) = higlass.display([view1])

display

and getting the following error:

ModuleNotFoundError Traceback (most recent call last)
Cell In [7], line 2
1 import higlass
----> 2 import higlass.client as hgc
3 import higlass.tilesets as hgti
5 ts1 = hgti.cooler('../data/AT_control_Rep1.1000.mcool')

ModuleNotFoundError: No module named 'higlass.client'

I can work on files from the server but cannot work on my own files. higlass installed with the following command: pip install jupyterlab higlass-python clodius

@shdemah
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shdemah commented Jan 11, 2024

also installed higlass-manage and try to do it as described in this tutorial (https://docs.higlass.io/tutorial.html#quickly-viewing-a-dataset) but it gives:
Cell In [1], line 1
higlass-manage start
^
SyntaxError: invalid syntax

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