Corruption of @comment fields used by BibDesk for library management #138
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Interesting! A quick look reveals that printing out comments is slightly problematic, because there are extra spaces around the outer braces. The parser does not seem to care about line-breaks at all for comments -- so it's probably the lexer that swallows the breaks. It's probably the chop here in the lexer that removes the line-breaks. |
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Loading a BibTeX file written by BibDesk and rewriting results in corruption and loss of library management settings that BibDesk encodes into comment fields in XML format. See before and after below.
It seems to me only linefeeds have been removed, which must not have any effect on parsing of the XML format, yet BibDesk can't find the script groups anymore. The only explanation I can come up with is that when all linefeeds are removed, the length of a comment field may become longer than the maximum line length conventionally supported by XML parsers. This limit is normally set to 32kb, while in my file the longest comment field is less than 14kb long. But still, the parser used in BibDesk may be over-sensitive or not standard-based.
Is there any way to prevent bibtex-ruby from reformatting these fields?
Before:
After:
@comment{ BibDesk Static Groups{ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd"> <plist version="1.0"> <array> <dict> <key>group name</key> <string>--- Reading List ---</string> <key>keys</key> <string>Ahuja2012gdo,Tourish2019tnm</string> </dict> <dict> <key>group name</key> <string>Correct Metadata Examples</string> <key>keys</key> <string>Bardram2010wpd,Brandes2009nes,Moran1996VALUE-CREATION,Chen2008eph,Brin1995cdm,Sung1988tpr,Daniel2008neo,Zargar2013rrw,Kumar2010seo,Mukherjee2013dcn,Pinsker2018isr,Pinsker2018rbh,Pinsker2018bhs,Kuk2006sik,Bonaccorsi2006esu,MacCormack2006esc,CasadesusMasanell2006dmd,Baldwin2006apd,vonKrogh2006ms</string> </dict> <dict> <key>group name</key> <string>Course: Aaron - Computational Field Research</string> <key>keys</key> <string>Lounsbury2002sso,Evans2014caq,Borner2010mls,Kilduff2006ptf,Abbott1990psm,Adamic2003snc,Haythornthwaite1998sns,Laxman2006std,Watts2007tfc,Wilson2001apc,Epstein1999abc,Sabherwal1993eti,Gabadinho2011avs,Berger2011cll,Wilson1999csa,Ahuja2000cns,Howison2014cto,Watts2011Collective-dynamics,Fortunato2010cdg,Girvan2002css,Elzinga2010cct,Carley2001cas,Cederman2005cms,Carley2002cos,Al2009css,LaRosa2011cmp,Gaskin2011dtv,Sarkar2005dsn,Agarwal2008eoi,Monge2001ecn,Barabasi1999esr,Kane2014elc,Situngkir2003ees,Kossinets2006eae,Gray2008etr,Barabasi2002esn,Borgs2004ecs,Macy2002ffa,Feller2008fpp,Krackhardt1994gtd,Vaast2011gte,Backstrom2006gfl,Mislove2008gfs,Holland1989ipi,Ahonen2015ibd,Langley2010ipp,Lazer2009lnc,Molloy2011mit,FalkKrzesinski2011mra,Mislove2007mao,Abbott1990mrs,Zachariadis2013mic,Newman2006mcs,Gauthier2010msa,Contractor2011mnd,Borgatti2009nas,Goggins2010nat,Daniel2008neo,Ahuja1999nsv,Brandes2009nes,Viegas2004nca,Holme2006npt,Borgatti1992nps,Freelon2014idt,Pentland1994org,Clauset2009pld,Goel2010pcb,Choi2012ppw,Krackhardt1987qpt,Hubert1976qag,Silverman1998qrm,Palla2007qsg,Abbott2000sao,Abbott1995san,Walker1997scs,Fulk1993scc,Tichy1979sna,Haines1988sna,Catanzaro2004sng,OinasKukkonen2010sni,Obstfeld2005snt,Gulati1995ssa,Uzzi1997ssc,White1976ssf,Wu2000scs,Cressie1993ssd,Fombrun1982snr,Burt2004shg,Burt2001shn,Kumar2010seo,Brass2004tsn,Contractor2006tmm,Kleinberg2008cst,Aral2011dbt,Hummon1995ecs,Suh2011ivs,Burt2000nss,Ron1996pal,Milgram1967swp,Baker1993soc,PerrySmith2003ssc,Uzzi1996sce,Granovetter1973swt,Granovetter1983swt,Granovetter1978tmc,Balkundi2006tlt,Geiger2011tef,Cook1992tas,Palla2005uoc,Webb1979umo,Gasson2011ugt,McKenny2012uca,Howison2011viu,Buhlmann1999vlm,Lyytinen2009vcr,Shen2011wcw,vanderAalst2004wmd</string> </dict> <dict> <key>group name</key> <string>Digital Methods: Network</string> <key>keys</key> <string>Kilduff2010osn,Kivela2014mn,Padgett1993rar,Gould1991mnm,Brennecke2017fkn</string> </dict> <dict> <key>group name</key> <string>Digital Methods: Semantic</string> <key>keys</key> <string>Hannigan2019tmm,Blei2012ptm,Kaplan2015des,Croidieu2017lla,Tirunillai2014mmm</string> </dict> <dict> <key>group name</key> <string>Import</string> <key>keys</key> <string></string> </dict> <dict> <key>group name</key> <string>Knowledge Reuse</string> <key>keys</key> <string>Alavi2001rkm,Argote2000ktb,Kyriakou2017krc,Allen2010iqr,Markus2001ttk,Majchrzak2004kri,Grant1996pdc,Kogut1992kfc,Teece1986pft,Szulanski2000pkt,Argote1999olc,Nonaka1994dto,Swan2001kma,Thomke1998med,Gray2000ekm,Hargadon1997tbi,Zahra2019wdw</string> </dict> <dict> <key>group name</key> <string>Multiplexity</string> <key>keys</key> <string>Li2019ute</string> </dict> <dict> <key>group name</key> <string>Project: Anthropomorphism</string> <key>keys</key> <string>Chmielewski2019mcs</string> </dict> <dict> <key>group name</key> <string>Similarity</string> <key>keys</key> <string>Zadeh2012dis,Broder1997rcd</string> </dict> <dict> <key>group name</key> <string>Writing & Reviewing</string> <key>keys</key> <string>Lee1995rmp,Lepak2009wig,Romanelli1996brl,Schwab198reb,Leblebici1996arb,Webster2002app</string> </dict> </array> </plist> } } @comment{ BibDesk Smart Groups{ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd"> <plist version="1.0"> <array> <dict> <key>conditions</key> <array> <dict> <key>comparison</key> <integer>4</integer> <key>key</key> <string>Journal</string> <key>value</key> <string></string> <key>version</key> <string>1</string> </dict> <dict> <key>comparison</key> <integer>4</integer> <key>key</key> <string>Journaltitle</string> <key>value</key> <string></string> <key>version</key> <string>1</string> </dict> <dict> <key>comparison</key> <integer>4</integer> <key>key</key> <string>Type</string> <key>value</key> <string>article</string> <key>version</key> <string>1</string> </dict> </array> <key>conjunction</key> <integer>0</integer> <key>group name</key> <string>Journalles Articles</string> </dict> </array> </plist> } } @comment{ BibDesk Script Groups{ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE plist PUBLIC "-//Apple//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd"> <plist version="1.0"> <array> <dict> <key>group name</key> <string>-Journal of Applied Psychology</string> <key>script arguments</key> <string>https://psycnet.apa.org/journals/apl.rss</string> <key>script path</key> <string>/Users/mah/Library/Application Support/BibDesk/Group Scripts/RSS2BibTeX.py</string> <key>script type</key> <integer>0</integer> </dict> <dict> <key>group name</key> <string>-Journal of Business Ethics</string> <key>script arguments</key> 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<key>script arguments</key> <string>https://journals.sagepub.com/action/showFeed?jc=ossa&type=etoc&feed=rss</string> <key>script path</key> <string>/Users/mah/Library/Application Support/BibDesk/Group Scripts/RSS2BibTeX.py</string> <key>script type</key> <integer>0</integer> </dict> <dict> <key>group name</key> <string>Organizational Research Methods</string> <key>script arguments</key> <string>https://journals.sagepub.com/action/showFeed?jc=orma&type=etoc&feed=rss</string> <key>script path</key> <string>/Users/mah/Library/Application Support/BibDesk/Group Scripts/RSS2BibTeX.py</string> <key>script type</key> <integer>0</integer> </dict> <dict> <key>group name</key> <string>Social Forces</string> <key>script arguments</key> <string>https://academic.oup.com/rss/site_5513/3374.xml "Social Forces"</string> <key>script path</key> <string>/Users/mah/Library/Application Support/BibDesk/Group Scripts/RSS2BibTeX.py</string> <key>script type</key> <integer>0</integer> </dict> <dict> <key>group name</key> <string>Strategic Entrepreneurship Journal</string> <key>script arguments</key> <string>https://onlinelibrary.wiley.com/feed/1932443x/most-recent</string> <key>script path</key> <string>/Users/mah/Library/Application Support/BibDesk/Group Scripts/RSS2BibTeX.py</string> <key>script type</key> <integer>0</integer> </dict> <dict> <key>group name</key> <string>Strategic Management Journal</string> <key>script arguments</key> <string>https://onlinelibrary.wiley.com/feed/10970266/most-recent</string> <key>script path</key> <string>/Users/mah/Library/Application Support/BibDesk/Group Scripts/RSS2BibTeX.py</string> <key>script type</key> <integer>0</integer> </dict> <dict> <key>group name</key> <string>Strategic Organization</string> <key>script arguments</key> <string>https://journals.sagepub.com/action/showFeed?jc=soqa&type=etoc&feed=rss</string> <key>script path</key> <string>/Users/mah/Library/Application Support/BibDesk/Group Scripts/RSS2BibTeX.py</string> <key>script type</key> <integer>0</integer> </dict> </array> </plist> } }The text was updated successfully, but these errors were encountered: