Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Stencil with self dependency and waterfall parallelization #88

Open
lehins opened this issue Nov 26, 2019 · 0 comments
Open

Stencil with self dependency and waterfall parallelization #88

lehins opened this issue Nov 26, 2019 · 0 comments
Projects

Comments

@lehins
Copy link
Owner

lehins commented Nov 26, 2019

Recently there was a request on dataHaskell gitter about creating an array in parallel, where generation of an array element depends on some of its neighbors. Here is a solution for 2D matrices:

waterfallCreate ::
     Mutable r Ix2 a => Sz2 -> (Maybe a -> Maybe a -> a) -> (a -> a -> a) -> Array r Ix2 a
waterfallCreate sz@(Sz2 m n) g f =
  unsafePerformIO $
  createArray_ Par sz $ \scheduler marr -> do
    void $ write marr (0 :. 0) $ g Nothing Nothing
    forM_ (1 ..: m) $ \i ->
      unsafeWrite marr (i :. 0) . g Nothing . Just =<< unsafeRead marr (i - 1 :. 0)
    forM_ (1 ..: n) $ \j -> do
      unsafeWrite marr (0 :. j) . (`g` Nothing) . Just  =<< unsafeRead marr (0 :. j - 1)
      let jIter = rangeStepSize Seq j (-1) (Sz (min (m - 1) j))
      iforSchedulerM_ scheduler jIter $ \i' -> writeF marr (i' + 1)
    forM_ (2 ..: m) $ \i -> do
      let jIter = rangeStepSize Seq (n - 1) (-1) (Sz (min (n - 1) (m - i)))
      iforSchedulerM_ scheduler jIter $ \i' -> writeF marr (i' + i)
  where
    writeF marr i j = do
      left <- unsafeRead marr (i :. j - 1)
      top <- unsafeRead marr (i - 1 :. j)
      unsafeWrite marr (i :. j) $ f left top
    {-# INLINE writeF #-}
{-# INLINE waterfallCreate #-}

Above solution is a good demonstration of the problem, but the full solution will require:

  • support for arbitrary dimensions
  • ability to select which neighbors there is a dependency on
  • implemented as a stencil, not only for creation of new arrays
  • use same optimizations as in DW array
  • block wise parallelization along the diagonal, instead of single element diagonal.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
massiv
  
Awaiting triage
Development

No branches or pull requests

1 participant