{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":6604361,"defaultBranch":"master","name":"mdtraj","ownerLogin":"mdtraj","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2012-11-08T22:01:24.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/9259532?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1717081541.0","currentOid":""},"activityList":{"items":[{"before":"add7203c68e8bd5055a1c1b28f542d8201a78dae","after":"f134696b3d6e3ae26b00221394779edcfc00d898","ref":"refs/heads/master","pushedAt":"2024-05-30T22:09:34.000Z","pushType":"pr_merge","commitsCount":24,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Merge pull request #1888 from mdtraj/rtd-migration\n\nReadTheDocs migration","shortMessageHtmlLink":"Merge pull request #1888 from mdtraj/rtd-migration"}},{"before":"78cc9cf584cc58b5ca95980da41afd8f1f2531d0","after":"99fefcf228024086d33c8ab482d1b980a3d8ea74","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-30T21:51:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Update new_to_python to not say 3.5","shortMessageHtmlLink":"Update new_to_python to not say 3.5"}},{"before":"8ba92ab5b3e44e905b0f4efeb90521bfca08b379","after":"78cc9cf584cc58b5ca95980da41afd8f1f2531d0","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-30T21:04:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Add read the docs badge","shortMessageHtmlLink":"Add read the docs badge"}},{"before":"002d6941c31788429aebd7f40d1ee74b572e6f59","after":"8ba92ab5b3e44e905b0f4efeb90521bfca08b379","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-30T00:12:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Point to correct dir for setup.py","shortMessageHtmlLink":"Point to correct dir for setup.py"}},{"before":"c3314916150afaaf4079043bec723847711d0bb3","after":"002d6941c31788429aebd7f40d1ee74b572e6f59","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-30T00:08:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Add MDTraj to readthedocs yaml installation","shortMessageHtmlLink":"Add MDTraj to readthedocs yaml installation"}},{"before":"9d7b18b68f6923d47968cfe19e21968a686912b1","after":"c3314916150afaaf4079043bec723847711d0bb3","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-30T00:01:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Modifications to readthedocs yaml","shortMessageHtmlLink":"Modifications to readthedocs yaml"}},{"before":"03229a9ba96e93a199cf2f8445fd4a660cdc48a7","after":"9d7b18b68f6923d47968cfe19e21968a686912b1","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-29T23:57:56.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Use a YAML file to properly install pandoc","shortMessageHtmlLink":"Use a YAML file to properly install pandoc"}},{"before":"9afb632a89696b93a278f3bab57b1df2255cbea8","after":"03229a9ba96e93a199cf2f8445fd4a660cdc48a7","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-29T23:31:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"remove vim line in docs/notebook-examples/index.rst","shortMessageHtmlLink":"remove vim line in docs/notebook-examples/index.rst"}},{"before":"e67b5bdd21ab21247535a698cc6cfa8918ad4b3e","after":"9afb632a89696b93a278f3bab57b1df2255cbea8","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-29T22:50:12.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Update requirements.txt","shortMessageHtmlLink":"Update requirements.txt"}},{"before":"7a3dcd73ac64425c6507353dddc8c9903a2b4302","after":"add7203c68e8bd5055a1c1b28f542d8201a78dae","ref":"refs/heads/master","pushedAt":"2024-05-29T13:30:10.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"mattwthompson","name":"Matt Thompson","path":"/mattwthompson","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7935382?s=80&v=4"},"commit":{"message":"Add atom selection via atom_indices to SASA computation (try #2, three years after) (#1844)\n\n* Add atom_selection_mask to SASA computation, tests added\r\n\r\n* Add atom_selection_mask to SASA computation, more tests added\r\n\r\n* Add atom_selection_mask to SASA computation, change return value to -1.","shortMessageHtmlLink":"Add atom selection via atom_indices to SASA computation (try #2, thre…"}},{"before":"8b67bf973601439ab5a2709b18567f5981f0fc90","after":"e67b5bdd21ab21247535a698cc6cfa8918ad4b3e","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-29T03:42:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Remove recommonmark from imports","shortMessageHtmlLink":"Remove recommonmark from imports"}},{"before":"533ec03ac64be2b91d1b343142e2bda9d3cc6489","after":"8b67bf973601439ab5a2709b18567f5981f0fc90","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-29T03:36:03.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Run atom-selection notebook once","shortMessageHtmlLink":"Run atom-selection notebook once"}},{"before":"f2b25753e4ce93782e3830cd7181924c96984292","after":"533ec03ac64be2b91d1b343142e2bda9d3cc6489","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-29T03:12:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Update python version to 3.11 in requirements.txt","shortMessageHtmlLink":"Update python version to 3.11 in requirements.txt"}},{"before":"e201b47433fddb1bb02159b7fa5cb9b2234c53ec","after":"f2b25753e4ce93782e3830cd7181924c96984292","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-29T02:57:06.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"fix openmm import in notebook","shortMessageHtmlLink":"fix openmm import in notebook"}},{"before":"144c8aa9017372573b19d6ed064046f39cabbbe6","after":"e201b47433fddb1bb02159b7fa5cb9b2234c53ec","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-29T02:37:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Add rtd yaml file","shortMessageHtmlLink":"Add rtd yaml file"}},{"before":"9446f69c644715737aed4263c322926549353737","after":"144c8aa9017372573b19d6ed064046f39cabbbe6","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-29T02:30:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Update docs/requirements.txt for notebooks","shortMessageHtmlLink":"Update docs/requirements.txt for notebooks"}},{"before":"7a3dcd73ac64425c6507353dddc8c9903a2b4302","after":"9446f69c644715737aed4263c322926549353737","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-29T02:14:07.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Initial changes to conf.py with new extensions","shortMessageHtmlLink":"Initial changes to conf.py with new extensions"}},{"before":null,"after":"7a3dcd73ac64425c6507353dddc8c9903a2b4302","ref":"refs/heads/rtd-migration","pushedAt":"2024-05-29T01:24:04.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Merge pull request #1841 from CharlieLaughton/issue_1829\n\nIssue 1829 - Fix for edge case where bond_angle or dihedral_angle is close to 180, resulting in nan","shortMessageHtmlLink":"Merge pull request #1841 from CharlieLaughton/issue_1829"}},{"before":"1748df86e8c56968ad129b151ff3ce0f5e67617e","after":"7a3dcd73ac64425c6507353dddc8c9903a2b4302","ref":"refs/heads/master","pushedAt":"2024-05-29T00:32:38.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"sukritsingh","name":"Sukrit Singh","path":"/sukritsingh","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8420446?s=80&v=4"},"commit":{"message":"Merge pull request #1841 from CharlieLaughton/issue_1829\n\nIssue 1829 - Fix for edge case where bond_angle or dihedral_angle is close to 180, resulting in nan","shortMessageHtmlLink":"Merge pull request #1841 from CharlieLaughton/issue_1829"}},{"before":"ae0214932e4fd213cda6f1fb321c564d03c85677","after":"1748df86e8c56968ad129b151ff3ce0f5e67617e","ref":"refs/heads/master","pushedAt":"2024-05-28T15:26:11.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"mattwthompson","name":"Matt Thompson","path":"/mattwthompson","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7935382?s=80&v=4"},"commit":{"message":"fix editable mode, add packaging as dependency (#1887)\n\n* fix editable mode, add packaging as dependency\r\n\r\n* forgot to set variable to attribute","shortMessageHtmlLink":"fix editable mode, add packaging as dependency (#1887)"}},{"before":"4c9bb6e8bc7d6e86890ff0d57814c3c76f7cf792","after":"ae0214932e4fd213cda6f1fb321c564d03c85677","ref":"refs/heads/master","pushedAt":"2024-05-28T13:23:49.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"mattwthompson","name":"Matt Thompson","path":"/mattwthompson","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7935382?s=80&v=4"},"commit":{"message":"Add explicit NumPy 1.x pin where `pip`-like tools look (#1886)\n\n* Add explicit NumPy 1.x pin\r\n\r\n* Update versions in `setup.py`\r\n\r\n* Syntax","shortMessageHtmlLink":"Add explicit NumPy 1.x pin where pip-like tools look (#1886)"}},{"before":"6ebd28839060dba739e44ed823a035f9512f5cce","after":"d45e780b4405230d7634ab376cfa7c9d606b24fc","ref":"refs/heads/numpy-1-im-not-kidding-this-time","pushedAt":"2024-05-28T13:16:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattwthompson","name":"Matt Thompson","path":"/mattwthompson","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7935382?s=80&v=4"},"commit":{"message":"Syntax","shortMessageHtmlLink":"Syntax"}},{"before":"2b610e678008bacc979de0a4bfe9bdb05cd2f900","after":"6ebd28839060dba739e44ed823a035f9512f5cce","ref":"refs/heads/numpy-1-im-not-kidding-this-time","pushedAt":"2024-05-28T13:12:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattwthompson","name":"Matt Thompson","path":"/mattwthompson","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7935382?s=80&v=4"},"commit":{"message":"Update versions in `setup.py`","shortMessageHtmlLink":"Update versions in setup.py"}},{"before":null,"after":"2b610e678008bacc979de0a4bfe9bdb05cd2f900","ref":"refs/heads/numpy-1-im-not-kidding-this-time","pushedAt":"2024-05-28T12:56:56.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mattwthompson","name":"Matt Thompson","path":"/mattwthompson","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7935382?s=80&v=4"},"commit":{"message":"Add explicit NumPy 1.x pin","shortMessageHtmlLink":"Add explicit NumPy 1.x pin"}},{"before":"91408369554220698063ee09a40f7defebdbc452","after":"4c9bb6e8bc7d6e86890ff0d57814c3c76f7cf792","ref":"refs/heads/master","pushedAt":"2024-05-17T10:12:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattwthompson","name":"Matt Thompson","path":"/mattwthompson","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7935382?s=80&v=4"},"commit":{"message":"Release v1.10.0rc1","shortMessageHtmlLink":"Release v1.10.0rc1"}},{"before":"58229869109149d6f6c553f453dbce1dceac62c8","after":"91408369554220698063ee09a40f7defebdbc452","ref":"refs/heads/master","pushedAt":"2024-05-17T10:03:00.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"mattwthompson","name":"Matt Thompson","path":"/mattwthompson","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7935382?s=80&v=4"},"commit":{"message":"Add release 1.10.0rc1 release notes (#1885)","shortMessageHtmlLink":"Add release 1.10.0rc1 release notes (#1885)"}},{"before":null,"after":"4b176fb9f3443500d1c3cb6d2961b4a6da802330","ref":"refs/heads/1-10-0-rc1-release-notes","pushedAt":"2024-05-17T09:58:45.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mattwthompson","name":"Matt Thompson","path":"/mattwthompson","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7935382?s=80&v=4"},"commit":{"message":"Add release 1.10.0rc1 release notes","shortMessageHtmlLink":"Add release 1.10.0rc1 release notes"}},{"before":"3d5fa756593a57ca90c0ae75d35d98c088172b42","after":"58229869109149d6f6c553f453dbce1dceac62c8","ref":"refs/heads/master","pushedAt":"2024-05-17T09:54:45.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"mattwthompson","name":"Matt Thompson","path":"/mattwthompson","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7935382?s=80&v=4"},"commit":{"message":"[WIP] Lint codebase (#1874)\n\n* Run linters, set up `pre-commit`\r\n\r\n* Update\r\n\r\n* Use ruff\r\n\r\n* Mega ruff updates\r\n\r\n* Fix a circular import\r\n\r\n* Update some imports\r\n\r\n* Lint\r\n\r\n* What's that doing there?\r\n\r\n* Remove BINPOS support\r\n\r\n* Remove more cruft\r\n\r\n* Merge/lint\r\n\r\n* Fix import\r\n\r\n* Fix import?\r\n\r\n* Other import\r\n\r\n* Revert some changes\r\n\r\n* Fix an import\r\n\r\n* Simpler test reporting\r\n\r\n* Un-undefine dimensionless?\r\n\r\n* More lint","shortMessageHtmlLink":"[WIP] Lint codebase (#1874)"}},{"before":"f4a6b0964fc14336a4f9d7d53eb2670635d26239","after":"cb77b8aeb3ddd052cff12951ebeac84ddf187124","ref":"refs/heads/lint-add-pre-commit","pushedAt":"2024-05-17T09:45:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattwthompson","name":"Matt Thompson","path":"/mattwthompson","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7935382?s=80&v=4"},"commit":{"message":"More lint","shortMessageHtmlLink":"More lint"}},{"before":"5932996f97f332e985db4fcb7885fb27705ded57","after":"f4a6b0964fc14336a4f9d7d53eb2670635d26239","ref":"refs/heads/lint-add-pre-commit","pushedAt":"2024-05-17T09:31:33.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mattwthompson","name":"Matt Thompson","path":"/mattwthompson","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7935382?s=80&v=4"},"commit":{"message":"Un-undefine dimensionless?","shortMessageHtmlLink":"Un-undefine dimensionless?"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEWHaUAAA","startCursor":null,"endCursor":null}},"title":"Activity · mdtraj/mdtraj"}