cenote-taker2_env.yml

name: cenote-taker2_env
channels:
  - defaults
  - bioconda
  - AgBiome
dependencies:
  - python=3.6
  - prodigal=2.6.3
  - samtools=1.3
  - blast=2.9.0
  - bioawk=1.0
  - entrez-direct=13.3
  - hmmer=3.3
  - bowtie2=2.3.5
  - trnascan-se=2.0.5
  - bbtools=37.62
  - tbl2asn=25.7
  - cmake=3.14.0
  - numpy=1.18.1
  - pandas=1.0.0
  - matplotlib=3.1.3
  - pysam=0.15.3
  - biopython
  - tbb=2020.2
  - seqkit=2.2.0
  - bedtools