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ENH: Allow /dev/stdin as input alignment arg #241

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corneliusroemer opened this issue May 16, 2023 · 0 comments
Open

ENH: Allow /dev/stdin as input alignment arg #241

corneliusroemer opened this issue May 16, 2023 · 0 comments

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@corneliusroemer
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To be able to work with compressed alignments, which is useful e.g. for monkeypox, it would be nice if treetime could accept the string /dev/stdin for alignments. Right now, it seems that alignments must be real files (isfile):

treetime/treetime/sequence_data.py

Line 149 in 23f935f

elif type(in_aln) in string_types and isfile(in_aln):

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