{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"T2T-Browser","owner":"marbl","isFork":false,"description":"Genome browser hub for the T2T genomes and resources","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10,0,0,0,0,5,0,0,2],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T18:22:05.219Z"}},{"type":"Public","name":"verkko","owner":"marbl","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":22,"starsCount":255,"forksCount":27,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T18:02:34.975Z"}},{"type":"Public","name":"HG002","owner":"marbl","isFork":false,"description":"A complete diploid human genome","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":1,"starsCount":82,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-22T15:43:20.458Z"}},{"type":"Public","name":"SALSA","owner":"marbl","isFork":false,"description":"SALSA: A tool to scaffold long read assemblies with Hi-C data","allTopics":["long-read","hic","assembly","scaffold"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":22,"starsCount":172,"forksCount":47,"license":"MIT License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,3,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-17T20:05:46.543Z"}},{"type":"Public","name":"meryl","owner":"marbl","isFork":false,"description":"A genomic k-mer counter (and sequence utility) with nice features.","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":30,"starsCount":103,"forksCount":11,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-16T13:48:46.785Z"}},{"type":"Public","name":"meryl-utility","owner":"marbl","isFork":false,"description":"A collection of miscellaneous code used by Meryl, Canu and others.","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-16T13:48:45.535Z"}},{"type":"Public","name":"merqury","owner":"marbl","isFork":false,"description":"k-mer based assembly evaluation","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":20,"starsCount":265,"forksCount":19,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T21:33:00.618Z"}},{"type":"Public","name":"Primates","owner":"marbl","isFork":false,"description":"Complete assemblies of non-human primate genomes","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":29,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T01:57:21.137Z"}},{"type":"Public","name":"Winnowmap","owner":"marbl","isFork":false,"description":"Long read / genome alignment software","allTopics":["nanopore","pacbio","genome-analysis"],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":25,"starsCount":226,"forksCount":21,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-30T19:43:26.438Z"}},{"type":"Public","name":"rukki","owner":"marbl","isFork":false,"description":"Extracting paths from assembly graphs","allTopics":[],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":18,"starsCount":19,"forksCount":0,"license":null,"participation":[6,1,5,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,2,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-26T20:37:41.038Z"}},{"type":"Public","name":"ModDotPlot","owner":"marbl","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":3,"starsCount":90,"forksCount":8,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-23T18:55:18.508Z"}},{"type":"Public","name":"canu","owner":"marbl","isFork":false,"description":"A single molecule sequence assembler for genomes large and small.","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":3,"issueCount":21,"starsCount":634,"forksCount":176,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T17:31:43.547Z"}},{"type":"Public","name":"training","owner":"marbl","isFork":false,"description":"Genome Assembly 102","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":6,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-15T02:30:15.014Z"}},{"type":"Public","name":"parsnp","owner":"marbl","isFork":false,"description":"Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surroundin…","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":22,"starsCount":120,"forksCount":25,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-12T02:54:24.383Z"}},{"type":"Public","name":"canu-regression","owner":"marbl","isFork":false,"description":"Regression test cases and results for Canu.","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-05T07:30:23.146Z"}},{"type":"Public","name":"CHM13","owner":"marbl","isFork":false,"description":"The complete sequence of a human genome","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":24,"starsCount":870,"forksCount":95,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-01T19:11:49.694Z"}},{"type":"Public","name":"seqrequester","owner":"marbl","isFork":false,"description":"A tool for summarizing, extracting, generating and modifying DNA sequences.","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":2,"starsCount":23,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-14T06:01:16.824Z"}},{"type":"Public","name":"HG002-issues","owner":"marbl","isFork":false,"description":"HG002 human reference genome issue tracking and polishing","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":34,"starsCount":10,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-23T17:57:45.928Z"}},{"type":"Public","name":"MashMap","owner":"marbl","isFork":false,"description":"A fast approximate aligner for long DNA sequences","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":19,"starsCount":259,"forksCount":38,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-22T02:01:58.382Z"}},{"type":"Public","name":"verkko-regression","owner":"marbl","isFork":false,"description":"Test suite for Verkko.","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-25T19:48:06.365Z"}},{"type":"Public","name":"CHM13-issues","owner":"marbl","isFork":false,"description":"CHM13 human reference genome issue tracking","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":18,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-18T04:31:57.024Z"}},{"type":"Public","name":"MetagenomeScope","owner":"marbl","isFork":false,"description":"Visualization tool for (meta)genome assembly graphs","allTopics":["bioinformatics","metagenomics","genome-assembly","visualization"],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":1,"issueCount":123,"starsCount":24,"forksCount":8,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-03T06:18:34.704Z"}},{"type":"Public","name":"harvest-tools","owner":"marbl","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":14,"starsCount":7,"forksCount":5,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-19T20:13:33.284Z"}},{"type":"Public","name":"gingr","owner":"marbl","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":1,"issueCount":15,"starsCount":13,"forksCount":4,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-05T19:05:03.519Z"}},{"type":"Public","name":"Mash","owner":"marbl","isFork":false,"description":"Fast genome and metagenome distance estimation using MinHash","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":3,"issueCount":78,"starsCount":377,"forksCount":90,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-26T10:37:04.022Z"}},{"type":"Public","name":"MHAP","owner":"marbl","isFork":false,"description":"MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":95,"forksCount":13,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-27T07:23:12.423Z"}},{"type":"Public","name":"MUMmer3","owner":"marbl","isFork":false,"description":"MUMmer3","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":2,"issueCount":8,"starsCount":13,"forksCount":8,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-01-12T03:03:28.896Z"}},{"type":"Public","name":"Krona","owner":"marbl","isFork":false,"description":"Interactively explore metagenomes and more from a web browser.","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":2,"issueCount":116,"starsCount":448,"forksCount":99,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-12-22T19:22:36.638Z"}},{"type":"Public","name":"binnacle","owner":"marbl","isFork":false,"description":"Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins","allTopics":["metagenomics","binning","scaffolding","metagenome-assembly","metagenome-assembled-genomes","changepoint-detection"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":9,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-12-07T19:33:44.958Z"}},{"type":"Public","name":"MetaCarvel","owner":"marbl","isFork":false,"description":"MetaCarvel: A scaffolder for metagenomes","allTopics":["genome-assembly","scaffolder","metagenomes"],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":2,"starsCount":13,"forksCount":14,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-07-07T19:07:24.948Z"}}],"repositoryCount":38,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}