diff --git a/.changeset/mighty-waves-tan.md b/.changeset/mighty-waves-tan.md
new file mode 100644
index 00000000000..bc2c6920c6f
--- /dev/null
+++ b/.changeset/mighty-waves-tan.md
@@ -0,0 +1,5 @@
+---
+"pnpm": patch
+---
+
+Fix an error that sometimes happen on projects with linked local dependencies [#5327](https://github.com/pnpm/pnpm/issues/5327).
diff --git a/.changeset/poor-berries-yell.md b/.changeset/poor-berries-yell.md
new file mode 100644
index 00000000000..c6ca71988dd
--- /dev/null
+++ b/.changeset/poor-berries-yell.md
@@ -0,0 +1,5 @@
+---
+"@pnpm/resolve-dependencies": patch
+---
+
+Fix the nodeId in dependenciesTree for linked local packages.
diff --git a/packages/resolve-dependencies/src/resolveDependencies.ts b/packages/resolve-dependencies/src/resolveDependencies.ts
index a9c10d9d3b2..f78a3318f84 100644
--- a/packages/resolve-dependencies/src/resolveDependencies.ts
+++ b/packages/resolve-dependencies/src/resolveDependencies.ts
@@ -665,7 +665,7 @@ async function resolveDependenciesOfDependency (
 
   if (resolveDependencyResult == null) return { resolveDependencyResult: null }
   if (resolveDependencyResult.isLinkedDependency) {
-    ctx.dependenciesTree[resolveDependencyResult.pkgId] = {
+    ctx.dependenciesTree[`link:${path.relative(ctx.lockfileDir, resolveDependencyResult.resolution.directory)}`] = {
       children: {},
       depth: -1,
       installable: true,