Unable to install pygraphviz in amazonlinux:2 Docker image

[nwalters512]

Place the following text in a file named Dockerfile:

FROM amazonlinux:2

RUN yum install -y python3 python3-devel gcc graphviz-devel

RUN pip3 install pygraphviz || ls /usr/include/graphviz && exit 1

Run docker build . and observe the following output:

[+] Building 1.0s (6/6) FINISHED                                                                                                                                                                                                                                                         
 => [internal] load build definition from Dockerfile                                                                                                                                                                                                                                0.0s
 => => transferring dockerfile: 191B                                                                                                                                                                                                                                                0.0s
 => [internal] load .dockerignore                                                                                                                                                                                                                                                   0.0s
 => => transferring context: 2B                                                                                                                                                                                                                                                     0.0s
 => [internal] load metadata for docker.io/library/amazonlinux:2                                                                                                                                                                                                                    0.0s
 => [1/3] FROM docker.io/library/amazonlinux:2                                                                                                                                                                                                                                      0.0s
 => CACHED [2/3] RUN yum install -y python3 python3-devel gcc graphviz-devel                                                                                                                                                                                                        0.0s
 => ERROR [3/3] RUN pip3 install pygraphviz || ls /usr/include/graphviz && exit 1                                                                                                                                                                                                   0.9s
------                                                                                                                                                                                                                                                                                   
 > [3/3] RUN pip3 install pygraphviz || ls /usr/include/graphviz && exit 1:                                                                                                                                                                                                              
#6 0.243 WARNING: Running pip install with root privileges is generally not a good idea. Try `pip3 install --user` instead.                                                                                                                                                              
#6 0.354 Collecting pygraphviz                                                                                                                                                                                                                                                           
#6 0.427   Downloading pygraphviz-1.7.zip (118 kB)                                                                                                                                                                                                                                       
#6 0.569 Using legacy 'setup.py install' for pygraphviz, since package 'wheel' is not installed.                                                                                                                                                                                         
#6 0.577 Installing collected packages: pygraphviz
#6 0.578     Running setup.py install for pygraphviz: started
#6 0.732     Running setup.py install for pygraphviz: finished with status 'error'
#6 0.732     ERROR: Command errored out with exit status 1:
#6 0.732      command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-vg065y7g/pygraphviz/setup.py'"'"'; __file__='"'"'/tmp/pip-install-vg065y7g/pygraphviz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-jiwlt3fy/install-record.txt --single-version-externally-managed --compile --install-headers /usr/local/include/python3.7m/pygraphviz
#6 0.732          cwd: /tmp/pip-install-vg065y7g/pygraphviz/
#6 0.732     Complete output (55 lines):
#6 0.732     running install
#6 0.732     running build
#6 0.732     running build_py
#6 0.732     creating build
#6 0.732     creating build/lib.linux-aarch64-3.7
#6 0.732     creating build/lib.linux-aarch64-3.7/pygraphviz
#6 0.732     copying pygraphviz/testing.py -> build/lib.linux-aarch64-3.7/pygraphviz
#6 0.732     copying pygraphviz/graphviz.py -> build/lib.linux-aarch64-3.7/pygraphviz
#6 0.732     copying pygraphviz/agraph.py -> build/lib.linux-aarch64-3.7/pygraphviz
#6 0.732     copying pygraphviz/scraper.py -> build/lib.linux-aarch64-3.7/pygraphviz
#6 0.732     copying pygraphviz/__init__.py -> build/lib.linux-aarch64-3.7/pygraphviz
#6 0.732     creating build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/test_close.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/test_drawing.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/test_node_attributes.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/test_subgraph.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/test_readwrite.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/test_string.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/test_graph.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/test_attribute_defaults.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/test_edge_attributes.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/test_scraper.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/test_unicode.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/test_layout.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/test_html.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/__init__.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     copying pygraphviz/tests/test_clear.py -> build/lib.linux-aarch64-3.7/pygraphviz/tests
#6 0.732     running egg_info
#6 0.732     writing pygraphviz.egg-info/PKG-INFO
#6 0.732     writing dependency_links to pygraphviz.egg-info/dependency_links.txt
#6 0.732     writing top-level names to pygraphviz.egg-info/top_level.txt
#6 0.732     reading manifest file 'pygraphviz.egg-info/SOURCES.txt'
#6 0.732     reading manifest template 'MANIFEST.in'
#6 0.732     warning: no files found matching '*.png' under directory 'doc'
#6 0.732     warning: no files found matching '*.txt' under directory 'doc'
#6 0.732     warning: no files found matching '*.css' under directory 'doc'
#6 0.732     warning: no previously-included files matching '*~' found anywhere in distribution
#6 0.732     warning: no previously-included files matching '*.pyc' found anywhere in distribution
#6 0.732     warning: no previously-included files matching '.svn' found anywhere in distribution
#6 0.732     no previously-included directories found matching 'doc/build'
#6 0.732     writing manifest file 'pygraphviz.egg-info/SOURCES.txt'
#6 0.732     copying pygraphviz/graphviz.i -> build/lib.linux-aarch64-3.7/pygraphviz
#6 0.732     copying pygraphviz/graphviz_wrap.c -> build/lib.linux-aarch64-3.7/pygraphviz
#6 0.732     running build_ext
#6 0.732     building 'pygraphviz._graphviz' extension
#6 0.732     creating build/temp.linux-aarch64-3.7
#6 0.732     creating build/temp.linux-aarch64-3.7/pygraphviz
#6 0.732     gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -moutline-atomics -D_GNU_SOURCE -fPIC -fwrapv -fPIC -I/usr/include/python3.7m -c pygraphviz/graphviz_wrap.c -o build/temp.linux-aarch64-3.7/pygraphviz/graphviz_wrap.o
#6 0.732     In file included from /usr/include/graphviz/gvc.h:17:0,
#6 0.732                      from pygraphviz/graphviz_wrap.c:2712:
#6 0.732     /usr/include/graphviz/types.h:49:10: fatal error: cgraph.h: No such file or directory
#6 0.732      #include <cgraph.h>
#6 0.732               ^~~~~~~~~~
#6 0.732     compilation terminated.
#6 0.732     error: command 'gcc' failed with exit status 1
#6 0.732     ----------------------------------------
#6 0.732 ERROR: Command errored out with exit status 1: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-vg065y7g/pygraphviz/setup.py'"'"'; __file__='"'"'/tmp/pip-install-vg065y7g/pygraphviz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-jiwlt3fy/install-record.txt --single-version-externally-managed --compile --install-headers /usr/local/include/python3.7m/pygraphviz Check the logs for full command output.
#6 0.878 arith.h
#6 0.878 cdt.h
#6 0.878 cgraph.h
#6 0.878 color.h
#6 0.878 geom.h
#6 0.878 graphviz_version.h
#6 0.878 gv.cpp
#6 0.878 gv.i
#6 0.878 gvc.h
#6 0.878 gvcext.h
#6 0.878 gvcjob.h
#6 0.878 gvcommon.h
#6 0.878 gvconfig.h
#6 0.878 gvplugin.h
#6 0.878 gvplugin_device.h
#6 0.878 gvplugin_layout.h
#6 0.878 gvplugin_loadimage.h
#6 0.878 gvplugin_render.h
#6 0.878 gvplugin_textlayout.h
#6 0.878 gvpr.h
#6 0.878 pack.h
#6 0.878 pathgeom.h
#6 0.878 pathplan.h
#6 0.878 textpara.h
#6 0.878 types.h
#6 0.878 usershape.h
#6 0.878 xdot.h
------
executor failed running [/bin/sh -c pip3 install pygraphviz || ls /usr/include/graphviz && exit 1]: exit code: 1

Note that gcc complains that <cgraph.c> cannot be found, although the ls output shows that /usr/include/graphviz definitely contains a cgraph.h file.

[mixtah]

I have the same issue but with public.ecr.aws/lambda/python:3.11.
I had public.ecr.aws/lambda/python:3.9 prior to this error, but but hadn't changed to code in a while working on other parts, so I can't remember if the latest commits with pygraphviz with 3.9 were working builds or not.
In either case, getting the same error as above.

I am installing

RUN yum update -y && \
    yum install -y gcc python3-devel.x86_64 && \
    yum install -y graphviz graphviz-devel ttf-freefont && \ ...

and later have

pip install --no-cache-dir pygraphviz==1.11 --target "${LAMBDA_TASK_ROOT}" --global-option=build_ext --global-option="-I/usr/include/graphviz" --global-option="-L/usr/lib/graphviz/"

I also had version 1.10 but bumped this to 1.11.