diff --git a/CHANGES b/CHANGES
index 9dedf1523e3..4a2059d18e5 100644
--- a/CHANGES
+++ b/CHANGES
@@ -37,6 +37,8 @@ Bugs fixed
 * #8686: LaTeX: Text can fall out of code-block at end of page and leave artifact
   on next page
 * #10579: i18n: UnboundLocalError is raised on translating raw directive
+* #9577, #10088: py domain: Fix warning for duplicate Python references when
+  using ``:any:`` and autodoc.
 
 Testing
 --------
diff --git a/sphinx/domains/python.py b/sphinx/domains/python.py
index fd43b15b262..370244a4362 100644
--- a/sphinx/domains/python.py
+++ b/sphinx/domains/python.py
@@ -1365,7 +1365,14 @@ def resolve_any_xref(self, env: BuildEnvironment, fromdocname: str, builder: Bui
 
         # always search in "refspecific" mode with the :any: role
         matches = self.find_obj(env, modname, clsname, target, None, 1)
+        multiple_matches = len(matches) > 1
+
         for name, obj in matches:
+
+            if multiple_matches and obj.aliased:
+                # Skip duplicated matches
+                continue
+
             if obj[2] == 'module':
                 results.append(('py:mod',
                                 self._make_module_refnode(builder, fromdocname,
diff --git a/tests/roots/test-domain-py/canonical.rst b/tests/roots/test-domain-py/canonical.rst
index eff783aadde..34becfdfb69 100644
--- a/tests/roots/test-domain-py/canonical.rst
+++ b/tests/roots/test-domain-py/canonical.rst
@@ -2,6 +2,9 @@ caninical
 =========
 
 :py:class:`.Foo`
+:any:`Foo`
+:any:`module.Foo`
+:any:`original.module.Foo`
 
 .. py:module:: canonical