V-pipe is a pipeline designed for analysing NGS data of short viral genomes
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Updated
Jun 7, 2024 - Jupyter Notebook
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
EDAM is an ontology of bioscientific data analysis and data management. EDAM concentrates on topics, operations, types of data, and data formats related to analysis, modelling, optimisation, and data life-cycle in biosciences, and in other research and science-based applications.
Python library for RO-Crate
Issue tracker, technical wiki, and example markup
Files for the Bioschemas website.
Fork of Galaxy (http://galaxyproject.org/) attempting to implement the CWL spec.
Join genomic variation graphs with public data or internal medical data e.g. FHIR. by having a FAIR data access, using W3C sparql as a standard protocol.
Handlegraph API in java for working with variation graph genome data.
Simple implementation of an in memory handlegraph in java for testing purposes
A github repo for the BioHackathon Europe 2020 "An interface between Galaxy and disease/pathway maps"
Server/docker image for sapfhir using spring-boot and docker image
Handlegraph RDF writers in java for working with variation graph genome data.
Handlegraph based GFA(1+2) parsers in java for working with variation graph genome data.
Implementation of the 3D-Beacons client (local 3D model server)
Epidemiology and monitoring ontology for COVID-19
Adaptors for content exchange between bio.tools and community projects.
A VSM-dictionary that communicates with PubDictionaries REST API
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