Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.
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Updated
Dec 4, 2019 - Shell
Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.
Analyzing the statistical differences and frequency of the genotype of cancer-risk SNPs between different human populations.
A prototype for the Exceptional Responder tool.
Classification of high risk and low risk cancer patients using Convolutional Neural Network and Mutli-Layer Perceptron.
a collection of notebooks containing analysis and visualization methods with publicly available data
Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
The CGR GWAS QC processing workflow.
Predicting the Probability or Occurrence of Relapse for Colorectal Cancer Patients using Gene Expression Data
MSc project for Bioinformatics with Systems Biology at Birkbeck, University of London
Analysing single-cell and DSP data to test the effect of copper chelation with TEPA in Neuroblastoma mice
NUS CS4220: Building a Weighted Gaussian Naive Bayes Model for prediction of gene essentiality in cancer cell-lines.
Lab website.
Downloading and processing pipelines used for single cell gene expression assays of human tumor biopsies
R Code and Required Files for Ma 2020 submission
Mechanistic Inference of Node-Edge Relationships (MINER)
A dataset and pre-production project for evaluating drug sensitivity scores across a network and identifying cancer dependency genes. Draws from NetMix and NETPHIX.
Computational analysis of RPL22 alterations and impact on MDM4 splicing
A more powerful analysis of tumor heterogeneity
Simulate ecDNA structures with user-specified properties.
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