Zebrafish embryo fluorescence quantification
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Updated
Jun 5, 2024 - Python
Zebrafish embryo fluorescence quantification
XRF-Maps is a C++ open source software package that implements these functions to provide a tool set for the analysis of XRF data sets
Burst analysis software for single and multi-spot single-molecule FRET (smFRET) data.
Physically corrected projectors for X-ray induced emission CT.
MATLAB package to analyze single-molecule FRET data
Fluorescent analysis of individualized C. elegans
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
An open-source python library for the processing of fluorescence video data
Supplemental resources for the Nellie paper.
3D volume rendering software for fluorescence microscopy
This is a repo for a Python based application to open SMS .h5 files, and perform the initial analysis and exporting.
A framework for tracking and analyzing flowing blood cells in time lapse microscopy images
File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy
This repository is very specific. It contains a nested dataset of 301 files. Six signals are processed: four uv-vis and a fluorescence signal.
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
Analyze fluorescence lifetime and anisotropy decays. (Mirror of github.com/fdsteffen/Lifefit)
A MATLAB data analysis toolkit for Fluorescence Lifetime Imaging Microscopy (FLIM) and an Alba v5 time-resolved confocal microscope operations manual
(Legacy project) A modular laboratory experiment management suite, predecessor to qudi-core.
A python code for analyzing photobleaching in fluorescence microscopy from a time series TIF image stack
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