k-mer
Here are 56 public repositories matching this topic...
Unique sequence search by K-mer exclusion
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Oct 10, 2023 - Go
Mutation table of COVID-19 virus genome with all possible substitution mutations and corresponding 20-mers for mutation identification
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Apr 21, 2022 - Python
A method for creating a dictionary of all k-mer abundances within a fasta file along with their corresponding Godel numbers.
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Jan 5, 2021 - R
Files from DIMACS 2007 DNA barcoding challenge
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Sep 21, 2022 - C
🧹 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
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Jan 28, 2023 - Python
K-mer spectrum corrector based on Hadoop
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Sep 5, 2018 - Java
This repository contains the results and comparison visualization of circRNA candidates detected by circRNA prediction softwares.
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Aug 8, 2022 - Python
A simple python script that counts k-mer matches between reference database and query .fasta files, optionally returning all non-matching query sequences. Designed originally for sequencing adapter decontamination.
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Aug 8, 2023 - Python
Reference-free FASTQ filter for rare germline and somatic variants
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Aug 3, 2023 - C++
A read classification tool based on Interleaved Bloom Filters
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Feb 20, 2021 - Python
A PHP hash table optimized for counting short gene sequences for use in Bioinformatics.
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Jun 22, 2021 - PHP
K-mer indexing and querying in RNA-Seq data
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Jan 23, 2019 - C++
Predicts anticancer peptides using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI.
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Nov 19, 2020 - R
A fork of the original https://github.com/medvedevgroup/UST tool.
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Mar 3, 2022 - C++
Assembles a genome and finds true mutations among sequencing errors
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Jun 15, 2019 - C++
Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
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Jan 28, 2021 - Python
This hackathon project aims to use a Convolutional Neural Network (CNN) to accurately identify promoter classes for DNA sequencing, leveraging spatial pattern recognition to enhance genetic analysis.
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Apr 27, 2022 - Jupyter Notebook
K-mer search enabled fast bacterial DNA sequence retrieval with DNA sequence analysis of Pittsburgh rivers.
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Jun 21, 2019 - Python
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