A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
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Updated
Aug 15, 2023 - Python
A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
WGS- Metasociomic- analysing bacterial social interactions in metagenomes of longitudinally collected samples of human microbiomes
Analysis of input alphabet sequential data
Analysing and Visualizing (EDA) and Cluster data Modeling for metagenomics and metatranscriptomics data to different microbial ecosystems
[a.a. 22/23] A. Aquino, N. Gagliarde
Antibiotic Resistance Genes Finding
Files needed to build and run Sequedex V2.
A code in R to make a Metagenomic analysis from data obtained from a taxonomical classification from KRAKEN 2
This repository contains scripts used to process the metagenomic and 16S rRNA gene amplicon data obtained from biological soil crusts in at the Avdat site in the Negev Desert, Israel. The results and discussion of the analysis are published in the manuscript "Distribution of mixotrophy and desiccation survival mechanisms across microbial genomes…
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
MAPle provides three different modules for the analysis of paired-end short read metagenomic data
MetAnnotate is a tool and web application for taxonomic profiling of shotgun metagenomes.
Projeto de análise metagenômica e metabolômica da microbiota de mulheres no climatério - LBBM UFOP
Repository for report for study project «Human Microbiome Research» by Blastim
MetaFast is a novel metagenomic analysis tool employing efficient containment search techniques and heuristics for read mapping to achieve significant speedup while maintaining high accuracy. This positions MetaFast as an efficient solution, optimally balancing speed and precision in metagenomic analysis.
Super fast script for classifying metagenomic 16S/18S sequences
Tools for metagenomic assembly processing.
Docker image for MGKit
This repository contains code for generating an interactive sunburst graphic for metagenomic analysis.
XGBoost implementation for bacteria family identification
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