Super fast script for classifying metagenomic 16S/18S sequences
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Updated
Dec 7, 2017 - Perl
Super fast script for classifying metagenomic 16S/18S sequences
ASAL - A simple, automated pipeline for metagenomic analysis.
utility scripts for metagenomics, RNAseq etc. reads processing.
MetAnnotate is a tool and web application for taxonomic profiling of shotgun metagenomes.
Tools for metagenomic assembly processing.
For more information see https://sequedex.lanl.gov
Files needed to build and run Sequedex V2.
Antibiotic Resistance Genes Finding
Optimize workflow for binning metagenomic short reads from multiple samples
BSc project: metagenomic analysis of urban park soil. Breakdown of some of the code I used can be viewed on this website:
This repository contains scripts used to process the metagenomic and 16S rRNA gene amplicon data obtained from biological soil crusts in at the Avdat site in the Negev Desert, Israel. The results and discussion of the analysis are published in the manuscript "Distribution of mixotrophy and desiccation survival mechanisms across microbial genomes…
R scripts, metadata, input files & reference database
Annotation Summary for MG-Rast -> Megan6 Annotations
Basic work flow and scripts to analyze Viral metagenomics: Trimming, quality checking, contamination removal and annotation
Projeto de análise metagenômica e metabolômica da microbiota de mulheres no climatério - LBBM UFOP
A simple code to analyze OTU table and RNA-seq normalization in R
Fast in-silico normalization algorithm for NGS data
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