The website showcases Arun Boddapati's professional portfolio, emphasizing his expertise as a bioinformatics scientist and machine learning expert.
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Updated
Jun 10, 2024 - HTML
The website showcases Arun Boddapati's professional portfolio, emphasizing his expertise as a bioinformatics scientist and machine learning expert.
Lightweight bioinformatics pipeline for microbial genome recovery
A reconfigurable machine learning pipeline for labeling ORFs/proteins in bacteriophage genomes and metagenomic data.
TAXnomic Profile Aggregation and STAndardisation
AMR/VF LGT focused bacterial genomics analysis workflow
TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
🦠📇 Genomes to report pipeline - for Bacteria and Archaea
A collection of Galaxy-related training material
(Meta-)genome screening for functional and natural product gene sequences
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
Assembly and binning of metagenomes
An analysis and visualization platform for 'omics data
CAMISIM: Simulating metagenomes and microbial communities
Nanomotif - a tool for identifying methylated motifs in metagenomic samples
Inference of microbial interaction networks from large-scale heterogeneous abundance data
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