-
Updated
Oct 17, 2017 - Python
protein-structure
Here are 486 public repositories matching this topic...
GRASP-Func: Function sorting with local graph representation
-
Updated
Jun 28, 2018 - Python
Superimpose a set of protein structures and report a RSMD matrix, in CSV and Mega-compatible formats, using Pymol as a module
-
Updated
Jul 6, 2020 - Python
Demonstrating analysis of PDBsum-related data via active Jupyter sessions provided via MyBinder.org
-
Updated
Mar 22, 2022 - Jupyter Notebook
TMvisDB provides per-residue transmembrane topology annotations for all proteins in AlphaFold DB (~ 200 million proteins, September '22) predicted as transmembrane proteins (~ 46 million).
-
Updated
Mar 13, 2023 - Python
A Tufts Research Technology Workshop detailing how to use AlphaFold 2 on the Tufts HPC cluster
-
Updated
May 13, 2022 - HTML
A transformer network trained to predict end-to-end single sequence protein structure as a set of angles given amino acid sequences.
-
Updated
Apr 29, 2023 - Python
The protein secondary structure classifier with 3 classes H/E/C (R implementation). Tertiary classifier is composed of binary classifiers using the combining scheme.
-
Updated
Nov 21, 2023 - R
Create pseudoatoms at the centroid of the catalytic atoms of a residue
-
Updated
Mar 26, 2024 - Rust
Superpose3D is a software for local comparison of protein structures that allows for user-defined structure representations
-
Updated
May 6, 2015 - C++
Implementation of the Ant Colony Optimization meta-heuristic for the Protein Structure Prediction problem using 2D HP model. This approach includes the pull move heuristic for local search.
-
Updated
Jul 15, 2022 - C
This script aims at reading a given PDB file and generation dihedral angles from it.
-
Updated
Sep 27, 2017 - Python
Rather brute optimizer for negative image-based models
-
Updated
Aug 17, 2023 - Shell
Software for visualizing and exporting proteins as a graph model in various formats. There are additional features for graph-based homology modelling
-
Updated
Jan 16, 2023 - Java
Code used for our paper, Variable Regions of p53 Isoforms Allosterically Hard Code DNA Interaction
-
Updated
Aug 19, 2022 - Shell
Understanding the relationship between amino acid sequence and protein function is a long-standing problem in molecular biology with far-reaching scientific implications.
-
Updated
Nov 11, 2022 - Jupyter Notebook
PSIQUE is a geometry-based secondary structure assignment method based on DFT calculations
-
Updated
Aug 24, 2023 - Crystal
To assess the secondary structure of your protein with STRIDE in Pymol
-
Updated
Oct 19, 2023 - Python
Protein representation learning using graph neural networks and Alphafold generated 3D structures.
-
Updated
Jul 12, 2023 - Python
Improve this page
Add a description, image, and links to the protein-structure topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the protein-structure topic, visit your repo's landing page and select "manage topics."