This protocol describes the measurement of epithelial barrier permeability in real-time following pharmacologic treatment in human intestinal organoids using fluorescent microscopy and live cell microscopy

Testing some unexpected Github PR behaviour

Code and data to accompany the chromswitch paper, "chromswitch: A flexible method for detecting chromatin state switches" (Jessa and Kleinman, Bioinformatics, 2018)

a template for transparent and reproducible analysis in R

A WRENCH implementation of the WorkQueue framework

flexible risk-based optimisation

R code for the data managment and statistical analysis performed for Digoxin use in contemporary heart failure with reduced ejection fraction: an analysis from the Swedish Heart Failure Registry

R code for the data managment to create a clean swedehf dataset for SCREAM

Final peer-graded assignment for the Coursera course 'Reproducible Templates for Analysis and Dissemination'

an entry level tutorial on writing research papers using GNU Make and CI/CD pipelines

This is the repository for the reproducible manuscript of "Psychometric evaluation of the Bangla-Translated Rotter’s Internal-External Scale through classical test theory and item response theory"

📌 Using matematical optimization to prioritise where to invest conservation funds

Separated data prep. / plot building stages for matplotlib

Opinionated stacks of ready-to-run scientific data analytics and visualization applications in Docker.

This repository contains reproduction of papers in iPython notebook.

Analyses of BCC 🇦🇺 data - animal permits

A Python package based on the ASpecD framework for handling TREPR data.

Jamal, S., Mohiuddin, H., Paez, A. (2020) How do the perceptions of neighborhood conditions impact active transportation? A study in Rajshahi, Bangladesh, Transportation Research Part D: Transport and Environment, 87:102525