A DSL for data-driven computational pipelines
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Updated
May 22, 2024 - Groovy
A DSL for data-driven computational pipelines
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
Workflow Description Language - Specification and Implementations
rrtools: Tools for Writing Reproducible Research in R
Electromagnetic methods in geophysics - open educational resources.
Papers with code for single cell related papers
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
High performance spatial analysis in a web browser, Node.js, and across programming languages and hardware architectures
VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these produ…
Learn to work more efficiently on empirical research projects.
A workflow for reproducible and open scientific articles
A very simple, re-executable neuroimaging publication (code)
Future Gadget Laboratory
A curated list of reproducible research case studies, projects, tutorials, and media
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
Source code for the CERN Analysis Preservation portal
Package an R workspace and all dependencies as a Docker container
The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data
Website for the ReproducibiliTea Journal Club and Podcast
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