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Feb 24, 2017 - Python
scrna-seq
Here are 371 public repositories matching this topic...
Analysis scripts for the Vertesy 2018 paper: "Parental haplotype specific single-cell transcriptomics reveal incomplete epigenetic reprogramming in human female germ cells"
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May 18, 2018 - R
Single cell trajectory detection
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Aug 21, 2018 - Jupyter Notebook
Config and util scripts for doing basic AWS set-up tasks
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Oct 8, 2018
Grab barcodes and UMIs for a collection of scRNAseq fasta files
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Oct 8, 2018 - Python
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Oct 10, 2018 - R
Iteratively randomly pooling scRNA-seq expressing a given gene from different numbers of cells and running DESeq2 with fdrtools correction to determine how many times which genes come out as enriched with said gene
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Nov 9, 2018 - Python
Recovery of transcriptome subsets from pooled single cell RNA sequencing libraries
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Nov 29, 2018 - C
Reconstruction of complex single-cell trajectories using CellRouter
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Dec 14, 2018 - R
Imputation method for scRNA-seq based on low-rank approximation
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Jan 2, 2019 - Python
A Shiny app for visualizing and exploring single cell RNA-sequencing data
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Feb 7, 2019 - R
Identification of bimodal genes in scRNA-Seq. - Pipeline designed to rank genes by their expression patterns to showcase the 'exp-runner' Python package at work.
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Mar 24, 2019 - Python
An autoencoder based imputation of the sparse single cell RNA-seq data.
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Apr 6, 2019 - Python
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