Infectious Disease Sequencing Platform
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Updated
May 28, 2024 - TypeScript
Infectious Disease Sequencing Platform
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Data intensive science for everyone.
A minimal and human-readable language and environment for the live coding of algorithmic electronic music.
SPAdes Genome Assembler
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools.
UGENE is free open-source cross-platform bioinformatics software
Lisp/McCLIM-based digital audio workstation and live coding laboratory.
Official code repository for GATK versions 4 and up
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
provides common tools and lookup tables used primarily by the hgvs and uta packages
Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
LncDC: a machine-learning based tool for long non-coding RNA detection from RNA-Seq data
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