A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
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Updated
May 24, 2024 - Julia
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
A library of tools for protein design
Webpage of the HADDOCK group
Webpage of the Bonvinlab @ Utrecht University and HADDOCK software
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
Molecular simulation in Julia
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
Protein-Protein Docking using Genetic Algorithm
Python implementation of 3D Zernike moments with Tensorflow
Python implementation of 3D Zernike moments with CuPy
Python implementation of 3D Zernike moments with NumPy
A dependency-free cross-platform swiss army knife for PDB files.
👋 Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
A C++ library for the creation of a large dataset of amino acid sidechain perturbations, own PDB Parser code included and some other things related.
Predicting the effect of mutations on protein stability using a simple orientational potential.
Python package to manage protein structures and their annotations
Mutual Information Tools for protein Sequence analysis in Julia
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