Code supporting "Comparing R packages for calculation of persistent homology" manuscript
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Updated
Jan 13, 2021 - R
Code supporting "Comparing R packages for calculation of persistent homology" manuscript
A small but developing tool for fast computation of Persistence Diagrams of Flag Filtrations.
GNG algorithm from "A Growing Neural Gas Network Learns Topologies" by Fritzke B.
Lung image analysis pipeline for topological PRM maps
Python bindings for `oineus`
Homework and codes in the Topological Data Analysis with Persistent Homology course at FGV EMAp.
Computing ER-staircode in python
Moja prezentacja o topologicznej analizie danych (chociaż jest bardziej o topologii niż o danych)
giotto topological data analysis forescating financial data tutorial
This is a repository for a study on applying Topological Data Analysis techniques, specifically Persistent Homology on Protein-Protein Interaction data to predict functional protein complexes.
Python scripts using the Visualization Toolkit (VTK) and Topology ToolKit (TTK) libraries. Tasks: visualize and explore topological features of a 3D volume and 2D scalar field datasets. 1. Probability density for the 3d electron position in a hydrogen atom and 2. 2D scalar field.
novelty detection with topological signatures
Here there are some useful stuff I have written to work on topological data analysis. Some of the code was developed with specific datasets in mind, but most should generalize well.
Incremental persistence algorithm for computing Betti numbers and the lifespan of the generators of homology.
Persistence B-Spline Grids: Stable Vector Representation of Persistence Diagrams
Our Topological Hyperparameter Evaluation Mapping Algorithm.
Simple topological data analysis (TDA) - creation of Rips-complex(es) from random data points in 3D.
ANUBiS is a C++ library of high-performance algorithms for computing topological invariants of point sets and simplicial topological spaces.
A landmark-based cover for KeplerMapper
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