A small but developing tool for fast computation of Persistence Diagrams of Flag Filtrations.
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Updated
Jul 31, 2021 - C++
A small but developing tool for fast computation of Persistence Diagrams of Flag Filtrations.
Topological data analysis of brain networks through order statistics
Python bindings for `oineus`
Moja prezentacja o topologicznej analizie danych (chociaż jest bardziej o topologii niż o danych)
giotto topological data analysis forescating financial data tutorial
This is a repository for a study on applying Topological Data Analysis techniques, specifically Persistent Homology on Protein-Protein Interaction data to predict functional protein complexes.
Python scripts using the Visualization Toolkit (VTK) and Topology ToolKit (TTK) libraries. Tasks: visualize and explore topological features of a 3D volume and 2D scalar field datasets. 1. Probability density for the 3d electron position in a hydrogen atom and 2. 2D scalar field.
Here there are some useful stuff I have written to work on topological data analysis. Some of the code was developed with specific datasets in mind, but most should generalize well.
R interface & extension to an adapted Persistence Landscapes Toolbox
Our Topological Hyperparameter Evaluation Mapping Algorithm.
Simple implementation of multiple data structures and algorithms used in computational topological data analysis
[2021 Summer Research in Applied Math & Statistics] A guide for beginners to learn statistical topological data analysis in R.
Detection of Gravitational Waves
This is a short implementation (done with my group) of a couple of topological signatures learned in the seminar course in my last year of Statistics.
A case study of Topological data analysis used Mapper algorithm to bring insights form iris dataset
Topological data analysis on DNA Sequence of Influenza
Implementation of an algorithm to compute persistence homologies
Molecular Dynamics Simulation for Polymer knots in LAMMPS
Analysis code for the "Using Adjusted Local Assortativity with Molecular Pixelation unveils colocalization of membrane proteins with immunological significance" paper
Approximating Persistent Homology for Geometric Insights
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