diff --git a/packages/vite/src/node/server/__tests__/moduleGraph.spec.ts b/packages/vite/src/node/server/__tests__/moduleGraph.spec.ts
index afaea5c151e949..2285d2fa4fa8b9 100644
--- a/packages/vite/src/node/server/__tests__/moduleGraph.spec.ts
+++ b/packages/vite/src/node/server/__tests__/moduleGraph.spec.ts
@@ -1,14 +1,10 @@
-import { beforeEach, describe, expect, it } from 'vitest'
+import { describe, expect, it } from 'vitest'
 import { ModuleGraph } from '../moduleGraph'
-let moduleGraph: ModuleGraph
 
 describe('moduleGraph', () => {
   describe('invalidateModule', () => {
-    beforeEach(() => {
-      moduleGraph = new ModuleGraph((id) => Promise.resolve({ id }))
-    })
-
     it('removes an ssrError', async () => {
+      const moduleGraph = new ModuleGraph(async (url) => ({ id: url }))
       const entryUrl = '/x.js'
 
       const entryModule = await moduleGraph.ensureEntryFromUrl(entryUrl, false)
@@ -18,5 +14,21 @@ describe('moduleGraph', () => {
       moduleGraph.invalidateModule(entryModule)
       expect(entryModule.ssrError).toBe(null)
     })
+
+    it('ensureEntryFromUrl should based on resolvedId', async () => {
+      const moduleGraph = new ModuleGraph(async (url) => {
+        if (url === '/xx.js') {
+          return { id: '/x.js' }
+        } else {
+          return { id: url }
+        }
+      })
+      const meta = { vite: 'test' }
+
+      const mod1 = await moduleGraph.ensureEntryFromUrl('/x.js', false)
+      mod1.meta = meta
+      const mod2 = await moduleGraph.ensureEntryFromUrl('/xx.js', false)
+      expect(mod2.meta).to.equal(meta)
+    })
   })
 })
diff --git a/packages/vite/src/node/server/moduleGraph.ts b/packages/vite/src/node/server/moduleGraph.ts
index 4bbd79cd5cc2f6..b9d928b589e00b 100644
--- a/packages/vite/src/node/server/moduleGraph.ts
+++ b/packages/vite/src/node/server/moduleGraph.ts
@@ -185,7 +185,7 @@ export class ModuleGraph {
     setIsSelfAccepting = true
   ): Promise<ModuleNode> {
     const [url, resolvedId, meta] = await this.resolveUrl(rawUrl, ssr)
-    let mod = this.urlToModuleMap.get(url)
+    let mod = this.idToModuleMap.get(resolvedId)
     if (!mod) {
       mod = new ModuleNode(url, setIsSelfAccepting)
       if (meta) mod.meta = meta
@@ -200,6 +200,11 @@ export class ModuleGraph {
       }
       fileMappedModules.add(mod)
     }
+    // multiple urls can map to the same module and id, make sure we register
+    // the url to the existing module in that case
+    else if (!this.urlToModuleMap.has(url)) {
+      this.urlToModuleMap.set(url, mod)
+    }
     return mod
   }