diff --git a/packages/vite/src/node/server/moduleGraph.ts b/packages/vite/src/node/server/moduleGraph.ts
index 45fea171ddcc1e..4bbd79cd5cc2f6 100644
--- a/packages/vite/src/node/server/moduleGraph.ts
+++ b/packages/vite/src/node/server/moduleGraph.ts
@@ -1,5 +1,4 @@
 import { extname } from 'node:path'
-import { parse as parseUrl } from 'node:url'
 import type { ModuleInfo, PartialResolvedId } from 'rollup'
 import { isDirectCSSRequest } from '../plugins/css'
 import {
@@ -237,10 +236,16 @@ export class ModuleGraph {
     url = removeImportQuery(removeTimestampQuery(url))
     const resolved = await this.resolveId(url, !!ssr)
     const resolvedId = resolved?.id || url
-    const ext = extname(cleanUrl(resolvedId))
-    const { pathname, search, hash } = parseUrl(url)
-    if (ext && !pathname!.endsWith(ext)) {
-      url = pathname + ext + (search || '') + (hash || '')
+    if (
+      url !== resolvedId &&
+      !url.includes('\0') &&
+      !url.startsWith(`virtual:`)
+    ) {
+      const ext = extname(cleanUrl(resolvedId))
+      const { pathname, search, hash } = new URL(url, 'relative://')
+      if (ext && !pathname!.endsWith(ext)) {
+        url = pathname + ext + search + hash
+      }
     }
     return [url, resolvedId, resolved?.meta]
   }
diff --git a/playground/resolve/index.html b/playground/resolve/index.html
index a1befcc2757348..bca49d55388e27 100644
--- a/playground/resolve/index.html
+++ b/playground/resolve/index.html
@@ -76,6 +76,9 @@ <h2>Monorepo linked dep</h2>
 <h2>Plugin resolved virtual file</h2>
 <p class="virtual"></p>
 
+<h2>Plugin resolved virtual file (#9036)</h2>
+<p class="virtual-9036"></p>
+
 <h2>Plugin resolved custom virtual file</h2>
 <p class="custom-virtual"></p>
 
@@ -221,6 +224,9 @@ <h2>resolve package that contains # in path</h2>
   import { msg as virtualMsg } from '@virtual-file'
   text('.virtual', virtualMsg)
 
+  import { msg as virtualMsg9036 } from 'virtual:file-9036.js'
+  text('.virtual-9036', virtualMsg9036)
+
   import { msg as customVirtualMsg } from '@custom-virtual-file'
   text('.custom-virtual', customVirtualMsg)
 
diff --git a/playground/resolve/vite.config.js b/playground/resolve/vite.config.js
index e2fa303598a26a..b27613eb6bc2ad 100644
--- a/playground/resolve/vite.config.js
+++ b/playground/resolve/vite.config.js
@@ -4,6 +4,9 @@ const { normalizePath } = require('vite')
 const virtualFile = '@virtual-file'
 const virtualId = '\0' + virtualFile
 
+const virtualFile9036 = 'virtual:file-9036.js'
+const virtualId9036 = '\0' + virtualFile9036
+
 const customVirtualFile = '@custom-virtual-file'
 const { a } = require('./config-dep')
 
@@ -44,6 +47,19 @@ module.exports = {
         }
       }
     },
+    {
+      name: 'virtual-module-9036',
+      resolveId(id) {
+        if (id === virtualFile9036) {
+          return virtualId9036
+        }
+      },
+      load(id) {
+        if (id === virtualId9036) {
+          return `export const msg = "[success] from virtual file #9036"`
+        }
+      }
+    },
     {
       name: 'custom-resolve',
       resolveId(id) {