diff --git a/packages/vite-node/src/server.ts b/packages/vite-node/src/server.ts
index b50b3cf049c8..fefe8e8bf805 100644
--- a/packages/vite-node/src/server.ts
+++ b/packages/vite-node/src/server.ts
@@ -192,7 +192,9 @@ export class ViteNodeServer {
   }
 
   protected async processTransformResult(result: TransformResult) {
-    return withInlineSourcemap(result)
+    return withInlineSourcemap(result, {
+      root: this.server.config.root,
+    })
   }
 
   private async _transformRequest(id: string, customTransformMode?: 'web' | 'ssr') {
diff --git a/packages/vite-node/src/source-map.ts b/packages/vite-node/src/source-map.ts
index 581c197f0d6d..94e076f51bab 100644
--- a/packages/vite-node/src/source-map.ts
+++ b/packages/vite-node/src/source-map.ts
@@ -1,6 +1,7 @@
 import type { TransformResult } from 'vite'
 import type { EncodedSourceMap } from '@jridgewell/trace-mapping'
 import { install } from './source-map-handler'
+import { toFilePath } from './utils'
 
 interface InstallSourceMapSupportOptions {
   getSourceMap: (source: string) => EncodedSourceMap | null | undefined
@@ -13,13 +14,24 @@ const VITE_NODE_SOURCEMAPPING_SOURCE = '//# sourceMappingSource=vite-node'
 const VITE_NODE_SOURCEMAPPING_URL = `${SOURCEMAPPING_URL}=data:application/json;charset=utf-8`
 const VITE_NODE_SOURCEMAPPING_REGEXP = new RegExp(`//# ${VITE_NODE_SOURCEMAPPING_URL};base64,(.+)`)
 
-export function withInlineSourcemap(result: TransformResult) {
+export function withInlineSourcemap(result: TransformResult, options: {
+  root: string // project root path of this resource
+}) {
   const map = result.map
   let code = result.code
 
   if (!map || code.includes(VITE_NODE_SOURCEMAPPING_SOURCE))
     return result
 
+  // sources path from `ViteDevServer` may be not a valid filesystem path (eg. /src/main.js),
+  // so we try to convert them to valid filesystem path
+  map.sources = map.sources.map((source) => {
+    if (!source)
+      return source
+    const { exists, path } = toFilePath(source, options.root)
+    return exists ? path : source
+  })
+
   // to reduce the payload size, we only inline vite node source map, because it's also the only one we use
   const OTHER_SOURCE_MAP_REGEXP = new RegExp(`//# ${SOURCEMAPPING_URL}=data:application/json[^,]+base64,(.+)`, 'g')
   while (OTHER_SOURCE_MAP_REGEXP.test(code))
diff --git a/test/stacktraces/fixtures/error-in-deps.test.js b/test/stacktraces/fixtures/error-in-deps.test.js
new file mode 100644
index 000000000000..e02d9f1e19ba
--- /dev/null
+++ b/test/stacktraces/fixtures/error-in-deps.test.js
@@ -0,0 +1,6 @@
+import { test } from 'vitest'
+import { add } from './foo'
+
+test('error in deps', () => {
+  add()
+})
diff --git a/test/stacktraces/fixtures/foo.js b/test/stacktraces/fixtures/foo.js
new file mode 100644
index 000000000000..aeac594e5605
--- /dev/null
+++ b/test/stacktraces/fixtures/foo.js
@@ -0,0 +1,2 @@
+// eslint-disable-next-line no-undef
+export const add = () => bar()
diff --git a/test/stacktraces/test/__snapshots__/runner.test.ts.snap b/test/stacktraces/test/__snapshots__/runner.test.ts.snap
index 646d97ab90b9..3fd11f080ae5 100644
--- a/test/stacktraces/test/__snapshots__/runner.test.ts.snap
+++ b/test/stacktraces/test/__snapshots__/runner.test.ts.snap
@@ -1,5 +1,21 @@
 // Vitest Snapshot v1, https://vitest.dev/guide/snapshot.html
 
+exports[`stacktrace should print error frame source file correctly > error-in-deps > error-in-deps 1`] = `
+"⎯⎯⎯⎯⎯⎯⎯ Failed Tests 1 ⎯⎯⎯⎯⎯⎯⎯
+
+ FAIL  error-in-deps.test.js > error in deps
+ReferenceError: bar is not defined
+ ❯ Module.add foo.js:2:26
+      1| // eslint-disable-next-line no-undef
+      2| export const add = () => bar()
+       |                          ^
+      3| 
+ ❯ error-in-deps.test.js:5:3
+
+⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[1/1]⎯
+"
+`;
+
 exports[`stacktraces should pick error frame if present > frame.spec.imba > frame.spec.imba 1`] = `
 " FAIL  frame.spec.imba [ frame.spec.imba ]
 imba-parser error: Unexpected 'CALL_END'
@@ -44,6 +60,13 @@ exports[`stacktraces should respect sourcemaps > add-in-js.test.js > add-in-js.t
 "
 `;
 
+exports[`stacktraces should respect sourcemaps > error-in-deps.test.js > error-in-deps.test.js 1`] = `
+" ❯ error-in-deps.test.js:5:3
+
+⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[1/1]⎯
+"
+`;
+
 exports[`stacktraces should respect sourcemaps > mocked-global.test.js > mocked-global.test.js 1`] = `
 " ❯ mocked-global.test.js:6:13
       4| 
diff --git a/test/stacktraces/test/runner.test.ts b/test/stacktraces/test/runner.test.ts
index 4c9254afa4c1..78f647934a0d 100644
--- a/test/stacktraces/test/runner.test.ts
+++ b/test/stacktraces/test/runner.test.ts
@@ -62,3 +62,27 @@ describe('stacktraces should pick error frame if present', async () => {
     }, 30000)
   }
 })
+
+describe('stacktrace should print error frame source file correctly', async () => {
+  const root = resolve(__dirname, '../fixtures')
+  const testFile = resolve(root, './error-in-deps.test.js')
+  it('error-in-deps', async () => {
+    // in Windows child_process is very unstable, we skip testing it
+    if (process.platform === 'win32' && process.env.CI)
+      return
+
+    const { stderr } = await execa('npx', ['vitest', 'run', testFile], {
+      cwd: root,
+      reject: false,
+      stdio: 'pipe',
+      env: {
+        ...process.env,
+        CI: 'true',
+        NO_COLOR: 'true',
+      },
+    })
+
+    // expect to print framestack of foo.js
+    expect(stderr).toMatchSnapshot('error-in-deps')
+  }, 30000)
+})
diff --git a/test/vite-node/src/foo.js b/test/vite-node/src/foo.js
new file mode 100644
index 000000000000..6e31ef4b12ed
--- /dev/null
+++ b/test/vite-node/src/foo.js
@@ -0,0 +1 @@
+export const add = (a, b) => a + b
diff --git a/test/vite-node/test/server.test.ts b/test/vite-node/test/server.test.ts
index a7f165371110..26fb4e4509c9 100644
--- a/test/vite-node/test/server.test.ts
+++ b/test/vite-node/test/server.test.ts
@@ -1,5 +1,8 @@
+import { resolve } from 'pathe'
 import { ViteNodeServer } from 'vite-node/server'
 import { describe, expect, test, vi } from 'vitest'
+import { createServer } from 'vite'
+import { extractSourceMap } from '../../../packages/vite-node/src/source-map'
 
 describe('server works correctly', async () => {
   test('resolve id considers transform mode', async () => {
@@ -26,4 +29,19 @@ describe('server works correctly', async () => {
     await vnServer.resolveId('/ssr', '/ssr path')
     expect(resolveId).toHaveBeenCalledWith('/ssr', '/ssr path', { ssr: true })
   })
+  test('fetchModule with id, and got sourcemap source in absolute path', async () => {
+    const server = await createServer({
+      logLevel: 'error',
+      root: resolve(__dirname, '../'),
+    })
+    const vnServer = new ViteNodeServer(server)
+
+    // fetchModule in not a valid filesystem path
+    const fetchResult = await vnServer.fetchModule('/src/foo.js')
+
+    const sourceMap = extractSourceMap(fetchResult.code!)
+
+    // expect got sourcemap source in a valid filesystem path
+    expect(sourceMap?.sources[0]).toBe(resolve(__dirname, '../src/foo.js'))
+  })
 })